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(-) Description

Title :  SOLUTION STRUCTURE OF A COVALENTLY BOUND PYRROLO[2,1-C][1, 4]BENZODIAZEPINE-BENZIMIDAZOLE HYBRID TO A 10MER DNA DUPLEX
 
Authors :  M. Rettig, M. Weingarth, W. Langel, A. Kamal, P. P. Kumar, K. Weisz
Date :  08 Feb 10  (Deposition) - 09 Mar 10  (Release) - 09 Mar 10  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (4x)
NMR Structure *:  A,B  (1x)
Keywords :  Dna Duplex, Pyrrolobenzodiazepine, Pbd-Benzimidazole Hybrid, Dna-Drug Complex, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Rettig, M. Weingarth, W. Langel, A. Kamal, P. P. Kumar, K. Weisz
Solution Structure Of A Covalently Bound Pyrrolo[2, 1-C][1, 4]Benzodiazepine-Benzimidazole Hybrid To A 10Mer Dna Duplex.
Biochemistry V. 48 12223 2009
PubMed-ID: 19911838  |  Reference-DOI: 10.1021/BI901655T

(-) Compounds

Molecule 1 - 5'-D(*AP*AP*CP*AP*AP*TP*TP*GP*TP*T)-3'
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (4x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1PBH1Ligand/Ion(11AS)-7-METHOXY-8-(3-{4-[6-(4-METHYLPIPERAZIN-1-YL)-1H-BENZIMIDAZOL-2-YL]PHENOXY}PROPOXY)-1,2,3,10,11,11A-HEXAHYDRO-5H-PYRROLO[2,1-C][1,4]BENZODIAZEPIN-5-ONE
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1PBH1Ligand/Ion(11AS)-7-METHOXY-8-(3-{4-[6-(4-METHYLPIPERAZIN-1-YL)-1H-BENZIMIDAZOL-2-YL]PHENOXY}PROPOXY)-1,2,3,10,11,11A-HEXAHYDRO-5H-PYRROLO[2,1-C][1,4]BENZODIAZEPIN-5-ONE

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDA A:4 , DT A:6 , DT A:7 , DG A:8 , DT A:9 , DC B:13 , DA B:14 , DA B:15 , DT B:16 , DT B:17 , DG B:18 , DT B:19BINDING SITE FOR RESIDUE PBH A 22

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2KTT)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:10
                                         
                  2ktt A  1 AACAATTGTT 10
                                    10


Chain B from PDB  Type:DNA  Length:10
                                         
                  2ktt B 11 AACAATTGTT 20
                                    20
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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