Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)NMR Structure - model 1
(-)NMR Structure - all models
collapse expand < >
Image NMR Structure - model 1
NMR Structure - model 1  (Jmol Viewer)
Image NMR Structure - all models
NMR Structure - all models  (Jmol Viewer)

(-) Description

Title :  MAUROCALCINE IN D CONFIGURATION FROM SCORPIO MAURUS PALMATUS
 
Authors :  K. Dridi, C. Bernard, H. Darbon
Date :  11 Nov 09  (Deposition) - 07 Jul 10  (Release) - 07 Jul 10  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Maurocalcine, Scorpion Venoms, D-Amino Acids, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Dridi, C. Bernard, H. Darbon, S. Alphonse
Maurocalcine In D Configuration From Scorpio Maurus Palmatu
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - D-MAUROCALCINE
    Chains: A
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (12, 31)

NMR Structure (12, 31)
No.NameCountTypeFull Name
1DAR4Mod. Amino AcidD-ARGININE
2DAS2Mod. Amino AcidD-ASPARTIC ACID
3DCY6Mod. Amino AcidD-CYSTEINE
4DGL2Mod. Amino AcidD-GLUTAMIC ACID
5DHI1Mod. Amino AcidD-HISTIDINE
6DIL1Mod. Amino AcidD-ISOLEUCINE
7DLE3Mod. Amino AcidD-LEUCINE
8DLY7Mod. Amino AcidD-LYSINE
9DPR1Mod. Amino AcidD-PROLINE
10DSG2Mod. Amino AcidD-ASPARAGINE
11DSN1Mod. Amino AcidD-SERINE
12DTH1Mod. Amino AcidD-THREONINE

(-) Sites  (0, 0)

(no "Site" information available for 2KQL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2KQL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2KQL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KQL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2KQL)

(-) Exons   (0, 0)

(no "Exon" information available for 2KQL)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:33
                                                                
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author .......ee...........eee......eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                  2kql A  1 GxxxxxxxxxxxxxxxxxxxxxxxGxxxxxxxx 33
                             |||||||10||||||||20|||| |||30|||
                             |||||||10-DCY|||19-DLY| ||29-DGL
                             2-DAS|||11-DLY|||20-DLY |||30-DLY
                              3-DCY|| 12-DGL|| 21-DCY||| 31-DAR
                               4-DLE|  13-DSG|  22-DLY||  32-DCY
                                5-DPR   14-DLY   23-DAR|   33-DAR
                                 6-DHI   15-DAS   24-DAR     
                                  7-DLE   16-DCY    26-DTH   
                                   8-DLY   17-DCY    27-DSG  
                                    9-DLE   18-DSN    28-DIL
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KQL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KQL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2KQL)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2KQL)

 Visualization

(-) Interactive Views

NMR Structure
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    DAR  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DAS  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DCY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DGL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DHI  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DIL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DLE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DLY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DPR  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DSG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DSN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DTH  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
(no "Sites" information available for 2kql)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2kql)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ NMR Structure - model 1 PNG format | NMR Structure - all models PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2kql
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2KQL)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2KQL)