2KQG - JenaLib

Title :   A G-RICH SEQUENCE WITHIN THE C-KIT ONCOGENE PROMOTER FORMS A PARALLEL G-QUADRUPLEX HAVING ASYMMETRIC G-TETRAD DYNAMICS

Authors :   S. -T. D. Hsu, P. Varnai, A. Bugaut, A. P. Reszka, S. Neidle, S. Balasubramanian

Date :   05 Nov 09 (Deposition) - 24 Nov 09 (Release) - 24 Nov 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (10x)

Keywords :   C-Kit2, Oncogene, Promoter, G-Quadruplex, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. -T. D. Hsu, P. Varnai, A. Bugaut, A. P. Reszka, S. Neidle, S. Balasubramanian
A G-Rich Sequence Within The C-Kit Oncogene Promoter Forms A Parallel G-Quadruplex Having Asymmetric G-Tetrad Dynamics
J. Am. Chem. Soc. V. 131 13399 2009
PubMed-ID: 19705869 | Reference-DOI: 10.1021/JA904007P
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

NMR Structure (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	DG A:2 , DG A:3 , DG A:6 , DG A:7 , DG A:14 , DG A:15 , DG A:18 , DG A:19 , K A:23	BINDING SITE FOR RESIDUE K A 22
2	AC2	SOFTWARE	DG A:3 , DG A:4 , DG A:7 , DG A:8 , DG A:15 , DG A:16 , DG A:19 , DG A:20 , K A:22	BINDING SITE FOR RESIDUE K A 23

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:DNA  Length:21
                                                    
                  2kqg A  1 CGGGCGGGCACGAGGGAGGGT 21
                                    10        20

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Classification and Annotation

SCOP Domains (0, 0)

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