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(-) Description

Title :  STRUCTURE OF THE TRIMETHYLENE N2-DG:N2-DG INTERSTRAND CROSS-LINK IN THE 5'-GPC-3' SEQUENCE CONTEXT
 
Authors :  H. Huang, P. A. Dooley, C. M. Harris, T. M. Harris, M. P. Stone
Date :  26 Aug 09  (Deposition) - 29 Sep 09  (Release) - 01 Dec 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
Keywords :  Interstrand Cross-Link, Trimethylene, Gpc Sequence Context, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Huang, P. A. Dooley, C. M. Harris, T. M. Harris, M. P. Stone
Differential Base Stacking Interactions Induced By Trimethylene Interstrand Dna Cross-Links In The 5'-Cpg-3' And 5'-Gpc-3' Sequence Contexts.
Chem. Res. Toxicol. V. 22 1810 2009
PubMed-ID: 19916525  |  Reference-DOI: 10.1021/TX900225C
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*TP*CP*CP*GP*CP*GP*GP*A)-3')
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

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NMR Structure : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1TME1Ligand/IonPROPANE

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:4 , DC A:5 , DG B:12 , DC B:13BINDING SITE FOR RESIDUE TME A 17

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:8
                                       
                  2knl A  1 TCCGCGGA  8


Chain B from PDB  Type:DNA  Length:8
                                       
                  2knl B  9 TCCGCGGA 16
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(-) Related Entries Specified in the PDB File

1luh PREVIOUSLY REFINED STRUCTURE
2knk