2KAR - JenaLib

Title :   HNE-DG ADDUCT MISMATCHED WITH DA IN ACIDIC SOLUTION

Authors :   H. Huang, H. Wang, R. S. Lloyd, C. J. Rizzo, M. P. Stone

Date :   13 Nov 08 (Deposition) - 26 May 09 (Release) - 26 May 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B

Keywords :   Hne-Dg, Mismatch, Hydroxynonenal, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Huang, H. Wang, R. S. Lloyd, C. J. Rizzo, M. P. Stone
Conformational Interconversion Of The Trans-4-Hydroxynonenal-Derived (6S, 8R, 11S) 1, N(2)-Deoxyguanosine Adduct When Mismatched With Deoxyadenosine In Dna
Chem. Res. Toxicol. V. 22 187 2009
PubMed-ID: 19053179 | Reference-DOI: 10.1021/TX800320M
(for further references see the PDB file header)

Compounds

*Molecule 1 - 5'- D(DGPDCPDTPDAPDGPDCPDGPDAPDGPDTPDCPDC)-3'*
	Chains	:	A
	Engineered	:	YES
	Other Details	:	THE DNA OLIGOMER IS CHEMICALLY SYNTHESIZED.
	Synthetic	:	YES

*Molecule 2 - 5'- D(DGPDGPDAPDCPDTPDAPDGPDCPDTPDAPDGPDC)-3'*
	Chains	:	B
	Engineered	:	YES
	Other Details	:	THE DNA OLIGOMER IS CHEMICALLY SYNTHESIZED.
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA  Length:12
                                           
                  2kar A  1 GCTAGCGAGTCC 12
                                    10

Chain B from PDB  Type:DNA  Length:12
                                           
                  2kar B 13 GGACTAGCTAGC 24
                                    22

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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