2K8U - JenaLib

Title :   SOLUTION NMR STRUCTURE OF TRANS-4-HYDROXYNONENAL DERIVED DG ADDUCT OF (6S,8R,11S)-CONFIGURATION MATCHED WITH DC

Authors :   H. Huang, H. Wang, N. Qi, R. S. Lloyd, C. J. Rizzo, M. P. Stone

Date :   23 Sep 08 (Deposition) - 04 Nov 08 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B

Keywords :   Hne-Dg (6S, 8R, 11S), Hne Derived Dg Adduct, Trans-4- Hydroxynonenal, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Huang, H. Wang, N. Qi, R. S. Lloyd, C. J. Rizzo, M. P. Stone
The Stereochemistry Of Trans-4-Hydroxynonenal-Derived Exocyclic 1, N2-2'-Deoxyguanosine Adducts Modulates Formation Of Interstrand Cross-Links In The 5'-Cpg-3' Sequence.
Biochemistry V. 47 11457 2008
PubMed-ID: 18847226 | Reference-DOI: 10.1021/BI8011143
(for further references see the PDB file header)

Compounds

*Molecule 1 - 5'- D(DGPDCPDTPDAPDGPDCPDGPDAPDGPDTPDCPDC)-3'*
	Chains	:	A
	Engineered	:	YES
	Other Details	:	DNA STRAND A
	Synthetic	:	YES

*Molecule 2 - 5'- D(DGPDGPDAPDCPDTPDCPDGPDCPDTPDAPDGPDC)-3'*
	Chains	:	B
	Engineered	:	YES
	Other Details	:	DNA STRAND B
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:DNA  Length:12
                                           
                  2k8u A  1 GCTAGCGAGTCC 12
                                    10

Chain B from PDB  Type:DNA  Length:12
                                           
                  2k8u B 13 GGACTCGCTAGC 24
                                    22

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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