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(-) Description

Title :  NMR STRUCTURE OF IMMUNOSUPPRESSORY PEPTIDE CONTAINING CYCLOLINOPEPTIDE X AND ANTENNAPEDIA(43-58) SEQUENCES
 
Authors :  L. Jaremko, M. Jaremko, I. Zhukov, M. Cebrat
Date :  21 Jul 07  (Deposition) - 29 Jul 08  (Release) - 03 Aug 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (19x)
NMR Structure *:  A,B  (1x)
Keywords :  Helix, Cyclolinopeptide, Immunosupression, Antennapedia(43-58), Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Jaremko, M. Jaremko, I. Zhukov, M. Cebrat, Z. Szewczuk
Nmr Structure Of Immunosuppressory Peptide Containing Cyclolinopeptide X And Antennapedia(43-58) Sequences
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 5-MER IMMUNOSUPPRESSORY PEPTIDE FROM CYCLOLINOPEPTIDE X
    Chains: A
    Engineered: YES
    Other Details: SOLID PHASE PEPTIDE SYNTHESIS, FMOC STRATEGY
    Synthetic: YES
 
Molecule 2 - MODIFIED 16-MER IMMUNOSUPPRESSORY PEPTIDE FROM HOMEOTIC PROTEIN ANTENNAPEDIA
    Chains: B
    Engineered: YES
    Other Details: SOLID PHASE PEPTIDE SYNTHESIS, FMOC STRATEGY
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (19x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 6)

NMR Structure (5, 6)
No.NameCountTypeFull Name
1ABU1Ligand/IonGAMMA-AMINO-BUTANOIC ACID
2ACA1Ligand/Ion6-AMINOHEXANOIC ACID
3NAL2Mod. Amino AcidBETA-(2-NAPHTHYL)-ALANINE
4NH21Mod. Amino AcidAMINO GROUP
5NLE1Mod. Amino AcidNORLEUCINE
NMR Structure * (5, 6)
No.NameCountTypeFull Name
1ABU1Ligand/IonGAMMA-AMINO-BUTANOIC ACID
2ACA1Ligand/Ion6-AMINOHEXANOIC ACID
3NAL2Mod. Amino AcidBETA-(2-NAPHTHYL)-ALANINE
4NH21Mod. Amino AcidAMINO GROUP
5NLE1Mod. Amino AcidNORLEUCINE

(-) Sites  (3, 3)

NMR Structure (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:2 , PRO A:3 , GLN B:9BINDING SITE FOR RESIDUE ABU A 1
2AC2SOFTWAREPRO A:2 , LEU A:5 , LEU A:6 , ARG B:8 , LYS B:20BINDING SITE FOR RESIDUE ACA A 7
3AC3SOFTWAREILE B:12 , PHE B:14 , ARG B:17 , ARG B:18 , LYS B:22 , LYS B:23BINDING SITE FOR RESIDUE NH2 B 24

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JT9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2JT9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JT9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2JT9)

(-) Exons   (0, 0)

(no "Exon" information available for 2JT9)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:5
                                    
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                  2jt9 A  2 PPILL  6


Chain B from PDB  Type:PROTEIN  Length:17
                                                
               SCOP domains ----------------- SCOP domains
               CATH domains ----------------- CATH domains
               Pfam domains ----------------- Pfam domains
         Sec.struct. author .....hhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------- SAPs(SNPs)
                    PROSITE ----------------- PROSITE
                 Transcript ----------------- Transcript
                  2jt9 B  8 RQIKIaFQNRRlKaKKx 24
                                 |  17 | |  |
                                13-NAL | |  |
                                      19-NLE|
                                        21-NAL
                                           24-NH2
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2JT9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2JT9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2JT9)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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