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Title :  THEORETICAL MODEL OF PHAC1 PROTEIN OF INDIGENOUS PSEUDOMONAS SP.LDC-5
 
Authors :  K. Sujatha, A. Mahalakshmi, R. Shenbagarathai
Date :  16 Aug 06  (Deposition) - 17 Aug 06  (Release) - 17 Aug 06  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Phac1, Pseudomonas Sp. Ldc-5, Homology Modeling, Alpha Beta Hydrolase Fold, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Sujatha, A. Mahalakshmi, R. Shenbagarathai
Theoretical Model Of Phac1 Protein Of Indigenous Pseudomonas Sp. Ldc-5
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHA SYNTHASE 1
    Chains: A
    EC Number: 5.3.1.16
    Fragment: ALPHA BETA HYDROLASE FOLD, RESIDUES 1-187
    Organism Scientific: PSEUDOMONAS SP. LDC-5
    Other Details: MADURAI COLLECTIN OF PHA ACCUMULATING PSEUDOMONAS STRAINS.
    Strain: LDC-5
    Variant: FIELD ISOLATE

 Structural Features

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Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2J2H)

(-) Sites  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:240
 aligned with Q5D4Z0_9PSED | Q5D4Z0 from UniProtKB/TrEMBL  Length:214

    Alignment length:244
                                                                                     1                                                                                                                                                                                          
                                     -         -         -         -         -       | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183    
         Q5D4Z0_9PSED     - ---------------------------------------------------------MLGACSGGITCTALVGHYAAIGENKVNALTLLVSVLDTTMDNQVALFVDEQTLEAAKRHSYQAGVLEGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILFWNNDTTRLPAAFHGDLIEMFKTNPLTRPTPWKCAAPRSTETGQMRHLRLAGTNDPLPMAVMLPLGTSVGGKIEFVLSNSGHI 187
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh...........hhhhh......hhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh----hh...eeeeee.............hhhhh.....hhhhhh...ee...hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh.....eehhhhhhhhhhhhhh..............hhhhh...eeeeee.....hhhhhhhhhh....eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2j2h A  12 RKRGLARFCLRSQQQTFITSWRNPTKAQREWGLSTYIDALKEAVDAVLAITGSKDLNMLGACSGGITCTALVG----IGENKVNALTLLVSVLDTTMDNQVALFVDEQTLEAAKRHSYQAGVLEGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILFWNNDTTRLPAAFHGDLIEMFKTNPLTRPTPWKCAAPRSTETGQMRHLRLAGTNDPLPMAVMLPLGTSVGGKIEFVLSNSGHI 255
                                    21        31        41        51        61        71        81  |    |91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    
                                                                                                   84   89
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2J2H)

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