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Title :  THEORETICAL MODEL OF DEPOLYMERASE GENE OF (PHAZ) PSEUDOMONAS SP.LDC-5
 
Authors :  K. Sujatha, A. Mahalakshmi, R. Shenbagarathai
Date :  16 Aug 06  (Deposition) - 17 Aug 06  (Release) - 17 Aug 06  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Depolymerase (Phaz), Pseudomonas Sp. Ldc-5, Homology Modelling, Pha Operon, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Sujatha, A. Mahalakshmi, R. Shenbagarathai
Theortical Model Of Depolymerase Gene Of (Phaz) Pseudomonas Sp. Ldc-5
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DEPOLYMERASE
    Chains: A
    EC Number: 3.1.1.75
    Fragment: PHA DEPOLYMERASE, RESIDUES 132-168
    Organism Scientific: PSEUDOMONAS SP. LDC-5
    Other Details: MADURAI COLLECTION OF PSEUDOMONAS ISOLATES
    Strain: LDC-5

 Structural Features

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Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

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(no "Ligand,Modified Residues,Ions" information available for 2J26)

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(-) Cis Peptide Bonds  (1, 1)

Theoretical Model
No.Residues
1Ile A:37 -Gly A:38

 Sequence-Structure Mapping

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(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:37
 aligned with Q5D4Y9_9PSED | Q5D4Y9 from UniProtKB/TrEMBL  Length:169

    Alignment length:37
                                   141       151       161       
         Q5D4Y9_9PSED   132 PYIFRTVQLDNQSIRTAVRPGKPHLTPLLIFNGIGAN 168
               SCOP domains ------------------------------------- SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author ..................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                 2j26 A   4 PYIFRTVQLDNQSIRTAVRPGKPHLTPLLIFNGIGAN  40
                                    13        23        33
   Legend:   → Mismatch (orange background)
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  Cis Peptide Bonds
    Ile A:37 - Gly A:38   [ RasMol ]  
 

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