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(-) Description

Title :  CRYSTAL STRUCTURE OF ACETAMIDASE (10172637) FROM BACILLUS HALODURANS AT 1.95 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  27 Sep 06  (Deposition) - 05 Dec 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  B,C  (1x)
Biol. Unit 4:  A,D  (1x)
Keywords :  10172637, Acetamidase, Structural Genomics, Joint Center For Structural Genomics, Psi-2, Protein Structure Initiative, Jcsg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Acetamidase (10172637) From Bacillus Halodurans At 1. 95 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACETAMIDASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: 10172637
    Organism Scientific: BACILLUS HALODURANS
    Organism Taxid: 86665

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD
Biological Unit 3 (1x):  BC 
Biological Unit 4 (1x): A  D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 54)

Asymmetric Unit (2, 54)
No.NameCountTypeFull Name
1CA15Ligand/IonCALCIUM ION
2MSE39Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 20)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MSE20Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 19)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MSE19Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 19)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MSE19Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 20)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MSE20Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:154 , ASP A:156 , ASP A:181 , CA A:401 , HOH A:442 , HOH A:514BINDING SITE FOR RESIDUE CA A 400
02AC2SOFTWARECYS A:36 , ASP A:181 , HIS A:183 , GLU A:197 , CA A:400 , HOH A:514BINDING SITE FOR RESIDUE CA A 401
03AC3SOFTWAREASN B:154 , ASP B:156 , ASP B:181 , CA B:401 , HOH B:409 , HOH B:504BINDING SITE FOR RESIDUE CA B 400
04AC4SOFTWARECYS B:36 , ASP B:181 , HIS B:183 , GLU B:197 , CA B:400 , HOH B:504BINDING SITE FOR RESIDUE CA B 401
05AC5SOFTWAREASN C:154 , ASP C:156 , ASP C:181 , CA C:401 , HOH C:405 , HOH C:488 , HOH C:505BINDING SITE FOR RESIDUE CA C 400
06AC6SOFTWARECYS C:36 , ASP C:181 , HIS C:183 , GLU C:197 , CA C:400 , HOH C:505BINDING SITE FOR RESIDUE CA C 401
07AC7SOFTWAREASN D:154 , ASP D:156 , ASP D:181 , CA D:401 , HOH D:429 , HOH D:503 , HOH D:518BINDING SITE FOR RESIDUE CA D 400
08AC8SOFTWARECYS D:36 , ASP D:181 , HIS D:183 , GLU D:197 , CA D:400 , HOH D:518BINDING SITE FOR RESIDUE CA D 401
09AC9SOFTWAREGLY B:163 , ASP B:222 , HOH B:421 , HOH B:503 , GLU C:232BINDING SITE FOR RESIDUE CA B 402
10BC1SOFTWAREGLU C:66 , HOH C:498 , ALA D:250 , THR D:253 , LEU D:255BINDING SITE FOR RESIDUE CA D 402
11BC2SOFTWAREALA C:250 , THR C:253 , LEU C:255 , HOH C:429 , HOH C:507 , GLU D:66BINDING SITE FOR RESIDUE CA C 402
12BC3SOFTWAREGLU C:232 , PRO C:278 , HOH C:407 , HOH C:449 , HOH C:502BINDING SITE FOR RESIDUE CA C 403
13BC4SOFTWARELEU C:102 , ASN C:103 , HOH C:457 , THR D:49 , HOH D:486BINDING SITE FOR RESIDUE CA C 404
14BC5SOFTWAREGLU A:66 , HOH A:439 , HOH A:475 , ALA B:250 , THR B:253 , LEU B:255BINDING SITE FOR RESIDUE CA B 403
15BC6SOFTWAREALA A:250 , THR A:253 , LEU A:255 , GLU B:66BINDING SITE FOR RESIDUE CA B 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2II1)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:61 -Pro A:62
2Leu A:216 -Pro A:217
3Gly B:61 -Pro B:62
4Leu B:216 -Pro B:217
5Gly C:61 -Pro C:62
6Leu C:216 -Pro C:217
7Gly D:61 -Pro D:62
8Leu D:216 -Pro D:217

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2II1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2II1)

(-) Exons   (0, 0)

(no "Exon" information available for 2II1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
 aligned with Q9KGN3_BACHD | Q9KGN3 from UniProtKB/TrEMBL  Length:300

    Alignment length:297
                             1                                                                                                                                                                                                                                                                                                       
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       
         Q9KGN3_BACHD     - -MIRLSNENTIFFMDKENVPIASCQSGDTVIFETKDCFSDQITNEEQALTSIDFNRVNPATGPLYVEGARRGDMLEIEILDIKVGKQGVMTAAPGLGALGESLNSPTTKLFPIEGDDVVYSTGLRLPLQPMIGVIGTAPPGEPINNGTPGPHGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAMGDGEILICGVEIAGTVTLKVNVKKERMFPLPALKTDTHFMTIASAETLDAAAVQATKNMATFLANRTALSIEEAGMLLSGAGDLYVSQIVNPLKTARFSLALHYFEKLGV 296
               SCOP domains d2ii1a_ A: automated matches                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....ee.ee.......eeee..eeeeeee.............hhhhhhhhhh..eeeeeeee......eeeeeeeeeee..eeeeee..............eeeeeeee..eee.....eee...eeeeee.......ee.......eee..........eeeee.....eeeeeeeee.............ee.eeeeeeeeee........eee...eeeeeeee.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhheeeeee.....eeeeeeeehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ii1 A   0 GmIRLSNENTIFFmDKENVPIASCQSGDTVIFETKDCFSDQITNEEQALTSIDFNRVNPATGPLYVEGARRGDmLEIEILDIKVGKQGVmTAAPGLGALGESLNSPTTKLFPIEGDDVVYSTGLRLPLQPmIGVIGTAPPGEPINNGTPGPHGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAmGDGEILICGVEIAGTVTLKVNVKKERmFPLPALKTDTHFmTIASAETLDAAAVQATKNmATFLANRTALSIEEAGmLLSGAGDLYVSQIVNPLKTARFSLALHYFEKLGV 296
                             |       9   |    19        29        39        49        59        69   |    79        89        99       109       119       129|      139       149       159       169       179      |189       199       209   |   219      |229       239     | 249       259  |    269       279       289       
                             |          13-MSE                                                      73-MSE          89-MSE                                  130-MSE                                                 186-MSE                    213-MSE      226-MSE            245-MSE          262-MSE                              
                             1-MSE                                                                                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:296
 aligned with Q9KGN3_BACHD | Q9KGN3 from UniProtKB/TrEMBL  Length:300

    Alignment length:296
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290      
         Q9KGN3_BACHD     1 MIRLSNENTIFFMDKENVPIASCQSGDTVIFETKDCFSDQITNEEQALTSIDFNRVNPATGPLYVEGARRGDMLEIEILDIKVGKQGVMTAAPGLGALGESLNSPTTKLFPIEGDDVVYSTGLRLPLQPMIGVIGTAPPGEPINNGTPGPHGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAMGDGEILICGVEIAGTVTLKVNVKKERMFPLPALKTDTHFMTIASAETLDAAAVQATKNMATFLANRTALSIEEAGMLLSGAGDLYVSQIVNPLKTARFSLALHYFEKLGV 296
               SCOP domains d2ii1b_ B: automated matches                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....ee.ee.......eeee..eeeeeee.............hhhhhhhhhh..eeeeeeee......eeeeeeeeeee..eeeeee..............eeeeeeee..eee.....eee...eeeeee.......ee...ee..eee..........eeeee.....eeeeeeeee.............ee.eeeeeeeeee........eee...eeeeeeee.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhheeeeee.....eeeeeeeehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ii1 B   1 mIRLSNENTIFFmDKENVPIASCQSGDTVIFETKDCFSDQITNEEQALTSIDFNRVNPATGPLYVEGARRGDmLEIEILDIKVGKQGVmTAAPGLGALGESLNSPTTKLFPIEGDDVVYSTGLRLPLQPmIGVIGTAPPGEPINNGTPGPHGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAmGDGEILICGVEIAGTVTLKVNVKKERmFPLPALKTDTHFmTIASAETLDAAAVQATKNmATFLANRTALSIEEAGmLLSGAGDLYVSQIVNPLKTARFSLALHYFEKLGV 296
                            |       10  |     20        30        40        50        60        70  |     80        90       100       110       120       130       140       150       160       170       180     | 190       200       210  |    220     | 230       240    |  250       260 |     270       280       290      
                            1-MSE      13-MSE                                                      73-MSE          89-MSE                                  130-MSE                                                 186-MSE                    213-MSE      226-MSE            245-MSE          262-MSE                              


Chain C from PDB  Type:PROTEIN  Length:296
 aligned with Q9KGN3_BACHD | Q9KGN3 from UniProtKB/TrEMBL  Length:300

    Alignment length:296
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291      
         Q9KGN3_BACHD     2 IRLSNENTIFFMDKENVPIASCQSGDTVIFETKDCFSDQITNEEQALTSIDFNRVNPATGPLYVEGARRGDMLEIEILDIKVGKQGVMTAAPGLGALGESLNSPTTKLFPIEGDDVVYSTGLRLPLQPMIGVIGTAPPGEPINNGTPGPHGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAMGDGEILICGVEIAGTVTLKVNVKKERMFPLPALKTDTHFMTIASAETLDAAAVQATKNMATFLANRTALSIEEAGMLLSGAGDLYVSQIVNPLKTARFSLALHYFEKLGVD 297
               SCOP domains d2ii1c_ C: automated matches                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....ee.ee.......eeee..eeeeeee..................hhhhh..eeeeeeee......eeeeeeeeeee..eeeeee..............eeeeeeee..eeeee..eeee...eeeeee.......ee.......eee..........eeeee.......eeeeeee.............ee.eeeeeeeeee........eee...eeeeeeee.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhheeeeee.....eeeeeeeehhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ii1 C   2 IRLSNENTIFFmDKENVPIASCQSGDTVIFETKDCFSDQITNEEQALTSIDFNRVNPATGPLYVEGARRGDmLEIEILDIKVGKQGVmTAAPGLGALGESLNSPTTKLFPIEGDDVVYSTGLRLPLQPmIGVIGTAPPGEPINNGTPGPHGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAmGDGEILICGVEIAGTVTLKVNVKKERmFPLPALKTDTHFmTIASAETLDAAAVQATKNmATFLANRTALSIEEAGmLLSGAGDLYVSQIVNPLKTARFSLALHYFEKLGVD 297
                                    11 |      21        31        41        51        61        71 |      81       |91       101       111       121       131       141       151       161       171       181    |  191       201       211 |     221    |  231       241   |   251       261|      271       281       291      
                                      13-MSE                                                      73-MSE          89-MSE                                  130-MSE                                                 186-MSE                    213-MSE      226-MSE            245-MSE          262-MSE                               


Chain D from PDB  Type:PROTEIN  Length:297
 aligned with Q9KGN3_BACHD | Q9KGN3 from UniProtKB/TrEMBL  Length:300

    Alignment length:297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       
         Q9KGN3_BACHD     1 MIRLSNENTIFFMDKENVPIASCQSGDTVIFETKDCFSDQITNEEQALTSIDFNRVNPATGPLYVEGARRGDMLEIEILDIKVGKQGVMTAAPGLGALGESLNSPTTKLFPIEGDDVVYSTGLRLPLQPMIGVIGTAPPGEPINNGTPGPHGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAMGDGEILICGVEIAGTVTLKVNVKKERMFPLPALKTDTHFMTIASAETLDAAAVQATKNMATFLANRTALSIEEAGMLLSGAGDLYVSQIVNPLKTARFSLALHYFEKLGVD 297
               SCOP domains d2ii1d_ D: automated matches                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....ee.ee.......eeee..eeeeeee.............hhhhhhhhhh..eeeeeeee......eeeeeeeeeee..eeeeee..............eeeeeeee..eeeee..eeee...eeeeee.......ee...ee..eee..........eeeee.......eeeeeee.............ee.eeeeeeeeee........eee...eeeeeeee.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhheeeeee.....eeeeeeeehhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ii1 D   1 mIRLSNENTIFFmDKENVPIASCQSGDTVIFETKDCFSDQITNEEQALTSIDFNRVNPATGPLYVEGARRGDmLEIEILDIKVGKQGVmTAAPGLGALGESLNSPTTKLFPIEGDDVVYSTGLRLPLQPmIGVIGTAPPGEPINNGTPGPHGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAmGDGEILICGVEIAGTVTLKVNVKKERmFPLPALKTDTHFmTIASAETLDAAAVQATKNmATFLANRTALSIEEAGmLLSGAGDLYVSQIVNPLKTARFSLALHYFEKLGVD 297
                            |       10  |     20        30        40        50        60        70  |     80        90       100       110       120       130       140       150       160       170       180     | 190       200       210  |    220     | 230       240    |  250       260 |     270       280       290       
                            1-MSE      13-MSE                                                      73-MSE          89-MSE                                  130-MSE                                                 186-MSE                    213-MSE      226-MSE            245-MSE          262-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2II1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2II1)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q9KGN3_BACHD | Q9KGN3)
molecular function
    GO:0016811    hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides    Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amide.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  2ii1
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