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Title :  3D STRUCTURE OF D-AMINO ACID OXIDASE [NECTRIA HAEMATOCOCCA]
 
Authors :  P. Bhattacharya
Date :  09 Sep 06  (Deposition) - 26 Sep 06  (Release) - 26 Sep 06  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  _
Keywords :  Fad, Flavoprotein, Oxidoreductase, Peroxisome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Bhattacharya, School Of Life Sciences, Jawaharlal Nehru University, New Delhi-110067, India, Tel:91-011-2670-4523, Fax:91-011-2618-7338
3D Structure Of D-Amino Acid Oxidase [Nectria Haematococca]
Journal(Not Decided Yet) V. 0 0 2006
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - D-AMINO ACID OXIDASE [NECTRIA HAEMATOCOCCA]
    Chains: _
    EC Number: 1.4.3.3.
    Fragment: D-AMINO ACID OXIDASE [NECTRIA HAEMATOCOCCA]
    Mutation: YES
    Organism Scientific: [NECTRIA HAEMATOCOCCA]
    Other Details: NECTRIA HAEMATOCOCCA [ NECTRIA HAEMATOCOCCA EUKARYOTA;
FUNGI;
ASCOMYCOTA;
PEZIZOMYCOTINA;
SORDARIOMYCETES;
HYPOCREOMYCETIDAE;
HYPOCREALES;
NECTRIACEAE;
NECTRIA].
    Strain: [NECTRIA HAEMATOCOCCA]

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2IB4)

(-) Sites  (0, 0)

(no "Site" information available for 2IB4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2IB4)

(-) Cis Peptide Bonds  (5, 5)

Theoretical Model
No.Residues
1Gly  :50 -Ala  :51
2Arg  :74 -Leu  :75
3Lys  :118 -Asn  :119
4Asp  :137 -Ser  :138
5Gly  :255 -Gly  :256

 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain _ from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..hhhhhhhhhhhhh......eee............hhhhh............hhhhhhhhhhh..hhhhh.....eee.......ee..ee....ee..................ee.hhhhh.......ee..eee.hhhhhhhhhhhhhhhh..ee............hhhhh......eee.hhhhhhh........eeeeeeeeeeee........ee..hhhhh....eeee....eeeee...ee.......hhhhhhhhhhhhhhhhhhhh...hhhhheeeeeeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ib4 _   5 IVVVGAGVIGLTSALLLSKNKGNKITVVAKHMPGDYDVEYASPFAGANHSPMATEESSEWERRTWYEFKRLVEEVPEAGVHFQKSRIQRRNVDTEKAQRSGFPDALFSKEPWFKNMFEDFREQHPSEVIPGYDSGCEFTSVCINTAIYLPWLLGQCIKNGVIVKRAILNDISEAKKLSHAGKTPNIIVNATGLGSYKLGGVEDKTMAPARGQIVVVRNESSPMLLTSGVEDGGADVMYLMQRAAGGGTILGGTYDVGNWESQPDPNIANRIMQRIVEVRPEIANGKGVKGLSVIRHAVGMRPWRKDGVRIEEEK 318
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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Theoretical Model(hide GO term definitions)
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  Cis Peptide Bonds
    Arg  :74 - Leu  :75   [ RasMol ]  
    Asp  :137 - Ser  :138   [ RasMol ]  
    Gly  :255 - Gly  :256   [ RasMol ]  
    Gly  :50 - Ala  :51   [ RasMol ]  
    Lys  :118 - Asn  :119   [ RasMol ]  
 

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