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(-) Description

Title :  CRYSTAL STRUCTURE OF A DUF1831 FAMILY PROTEIN (LP2179) FROM LACTOBACILLUS PLANTARUM AT 1.20 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  08 Sep 06  (Deposition) - 10 Oct 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Bakolitsa, A. Kumar, D. Carlton, M. D. Miller, S. S. Krishna, P. Abdubek, T. Astakhova, H. L. Axelrod, H. J. Chiu, T. Clayton, M. C. Deller, L. Duan, M. A. Elsliger, J. Feuerhelm, S. K. Grzechnik, J. C. Grant, G. W. Han, L. Jaroszewski, K. K. Jin, H. E. Klock, M. W. Knuth P. Kozbial, D. Marciano, D. Mcmullan, A. T. Morse, E. Nigoghossian, L. Okach, S. Oommachen, J. Paulsen, R. Reyes, C. L. Rife, H. J. Tien, C. V. Trout, H. Van Den Bedem, D. Weekes, Q. Xu, K. O. Hodgson, J. Wooley, A. M. Deacon, A. Godzik, S. A. Lesley, I. A. Wilson
Structure Of Lp2179, The First Representative Of Pfam Famil Pf08866, Suggests A New Fold With A Role In Amino-Acid Metabolism.
Acta Crystallogr. , Sect. F V. 66 1205 2010
PubMed-ID: 20944212  |  Reference-DOI: 10.1107/S1744309109023689

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_785678.1
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:0 , MSE A:1 , ILE A:105 , THR A:112 , HOH A:223 , HOH A:249BINDING SITE FOR RESIDUE CL A 114
2AC2SOFTWAREGLU A:43 , ARG A:44 , SER A:45 , LYS A:57 , ASP A:65 , HOH A:228 , HOH A:234BINDING SITE FOR RESIDUE GOL A 115

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:114
 aligned with F9UQB2_LACPL | F9UQB2 from UniProtKB/TrEMBL  Length:113

    Alignment length:114
                             1                                                                                                                
                             |       9        19        29        39        49        59        69        79        89        99       109    
         F9UQB2_LACPL     - -MAYTTTVKLDGDTKTYTLSPTVKKYTLMDLGFVKGRSGAFSFERSLDPTSPYQAAFKLKMTVNADLTGFKMTTVTGNGVQRANIFKNDAHPEAVEQLRYILANFIERDILTTD 113
               SCOP domains -d2iaya1 A:1-113 Hypothetical protein Lp2179                                                                       SCOP domains
               CATH domains 2iayA00 A:0-113 Lp2179-like domain                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......ee........eee....hhhhhhhh..ee.....eeeeeee.........eeeeeee......eeeeeee.........hhhhhhhhhhhhhhhhhhhhhhh..eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 2iay A   0 GmAYTTTVKLDGDTKTYTLSPTVKKYTLmDLGFVKGRSGAFSFERSLDPTSPYQAAFKLKmTVNADLTGFKmTTVTGNGVQRANIFKNDAHPEAVEQLRYILANFIERDILTTD 113
                             |       9        19        29        39        49        59|       69 |      79        89        99       109    
                             |                         28-MSE                          60-MSE     71-MSE                                      
                             1-MSE
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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