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(-) Description

Title :  THEORETICAL MODEL OF RET PROTEIN KINASE COMPLEXED WITH ATP BASED ON THE INSULIN RECEPTOR TYROSINE PROTEIN KINASE X-RAY STRUCTURE
 
Authors :  Susan S. Taylor, Elzbieta S. Radzio-Andzelm
Date :  04 Aug 06  (Deposition) - 10 Oct 06  (Release) - 10 Oct 06  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,_#
( #:   chains that contain no standard or modified protein/DNA/RNA residue)
 
Keywords :  Protein Kinase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. N. Cranston, C. Carniti, K. Oakhill, E. Radzio-Andzelm, E. A. Stone, A. S. Mccallion, S. Hodgson, S. Clarke, P. Mondellini, B. A. J. Leyland, J. , Pierotti, M. A. , Whittaker, J. , Taylor, S. S. , Bongarzone, I. , Ponder
Ret Is Constitutively Activated By Novel Tandem Mutations That Alter The Active Site Resulting In Men 2B
Cancer Research V. Acce 2006
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RET RECEPTOR TYROSINE PROTEIN KINASE
    Chains: A
    EC Number: 2.7.1.37
    Engineered: YES
    Fragment: PROTEIN KINASE DOMAIN OF RET (REARRANGED DURING TRANSFECTION)
    Organism Scientific: THEORETICAL MODEL

 Structural Features

(-) Chains, Units

  
Theoretical Model : 
( #:   chains that contain no standard or modified protein/DNA/RNA residue)
 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Theoretical Model (1, 1)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 2HY2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2HY2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2HY2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2HY2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2HY2)

(-) Exons   (0, 0)

(no "Exon" information available for 2HY2)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:282
 aligned with Q15850_HUMAN | Q15850 from UniProtKB/TrEMBL  Length:435

    Alignment length:306
                                    85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375      
        Q15850_HUMAN     76 EDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVKRRDYLDL  381
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhh.eeeeeeeee...eeeeeeee.........eeeeeeee....hhhhhhhhhhhhhhhhhh.......eeeee......eeeee....eehhhhhhhh..------------------------.hhhhhhhhhhhhhhhhhhhhhh.ee.........ee.....ee.......ee.....eee............hhhhhh..eee.hhhhhhhhhhhhhhhh.........hhhhhhhhhhhh.........hhhhhhhhhhhh........hhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                2hy2 A  713 EDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRK------------------------LTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVKRRDYLDL 1018
                                   722       732       742       752       762       772       782       792       802       812        |-         -         -   |   852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012      
                                                                                                                                      821                      846
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2HY2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2HY2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2HY2)

(-) Gene Ontology  (5, 5)

Theoretical Model(hide GO term definitions)
Chain A   (Q15850_HUMAN | Q15850)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004713    protein tyrosine kinase activity    Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate.
biological process
    GO:0018108    peptidyl-tyrosine phosphorylation    The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.

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