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Title :   SOLUTION STRUCTURE OF CROTONALDEHYDE-DERIVED N2-[3-OXO-1(S)-METHYL-PROPYL]-DG DNA ADDUCT IN THE 5'-CPG-3' SEQUENCE

Authors :   Y. -J. Cho, H. Wang, I. D. Kozekov, A. J. Kurtz, J. Jacob, M Voehler, J. Smith, T. M. Harris, C. J. Rizzo, M. P. Stone

Date :   07 Jul 06 (Deposition) - 19 Sep 06 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B

Keywords :   Interstrand Dna Cross-Link; S-Crotonaldehyde-Dg Adduct; 5'- Cpg-3' Sequence (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. -J. Cho, H. Wang, I. D. Kozekov, A. Kozekova, A. J. Kurtz, J. Jacob, M. Voehler, J. Smith, T. M. Harris, C. J. Rizzo, R. S. Lloyd, M. P. Stone
Orientation Of The Crotonaldehyde-Derived N(2)-[3-Oxo-1(S)-Methyl-Propyl]-Dg Dna Adduct Hinders Interstrand Cross-Link Formation In The 5'-Cpg-3' Sequence
Chem. Res. Toxicol. V. 19 1019 2006
PubMed-ID: 16918240 | Reference-DOI: 10.1021/TX0600604
(for further references see the PDB file header)

Compounds

Molecule 1 - DNA DODECAMER WITH S-CROTONALDEHYDE ADDUCT
	Chains	:	A
	Engineered	:	YES
	Other Details	:	ALL ADDUCTED SEQUENCES WERE MADE BY DR. RIZZO AND DR. HARRIS LAB AT VANDERBILT
	Synthetic	:	YES

Molecule 2 - DNA DODECAMER
	Chains	:	B
	Engineered	:	YES
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

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NMR Structure

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Chain A from PDB  Type:DNA  Length:12
                                           
                  2hli A  1 GCTAGCgAGTCC 12
                                  | 10  
                                  7-KAG

Chain B from PDB  Type:DNA  Length:12
                                           
                  2hli B 13 GGACTCGCTAGC 24
                                    22

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SCOP Domains (0, 0)

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