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Title :   NMR STRUCTURE OF THE B-DNA DODECAMER CTCGGCGCCATC

Authors :   F. Wang, N. E. Demuro, C. E. Elmquist, J. S. Stover, C. J. Rizzo, M. P. Stone

Date :   03 Jul 06 (Deposition) - 03 Oct 06 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B  (10x)

Keywords :   Nar1, Nmr Structure, Rmd Calculations, Anneal, Noesy, Cosy, Hsqc, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Wang, N. E. Demuro, C. E. Elmquist, J. S. Stover, C. J. Rizzo, M. P. Stone
Base-Displaced Intercalated Structure Of The Food Mutagen 2-Amino-3-Methylimidazo[4, 5-F]Quinoline In The Recognition Sequence Of The Nari Restriction Enzyme, A Hotspot For -2 Bp Deletions.
J. Am. Chem. Soc. V. 128 10085 2006
PubMed-ID: 16881637 | Reference-DOI: 10.1021/JA062004V
(for further references see the PDB file header)

Compounds

*Molecule 1 - 5'-D(CPTPCPGPGPCPGPCPCPAPTPC)-3'*
	Chains	:	A
	Engineered	:	YES
	Other Details	:	THE UNMODIFIED OLIGODEOXYNUCLEOTIDES 5'- D(CTCGGCGCCATC)-3' AND 5'-D(GATGGCGCCGAG)-3' WERE OBTAINED FROM THE MIDLAND CERTIFIED REAGENT COMPANY, AND HAD BEEN PURIFIED BY ANION EXCHANGE CHROMATOGRAPHY.
	Synthetic	:	YES

*Molecule 2 - 5'-D(GPAPTPGPGPCPGPCPCPGPAPG)-3'*
	Chains	:	B
	Engineered	:	YES
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

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Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:DNA  Length:12
                                           
                  2hkb A  1 CTCGGCGCCATC 12
                                    10

Chain B from PDB  Type:DNA  Length:12
                                           
                  2hkb B 13 GATGGCGCCGAG 24
                                    22

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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