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(-) Description

Title :  CRYSTALLIZATION OF THE TL+-FORM OF THE OXYTRICHA NOVA G-QUADRUPLEX
 
Authors :  M. L. Gill, S. A. Strobel, J. P. Loria
Date :  14 Jun 06  (Deposition) - 19 Sep 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Deoxyribonucleic Acid, G-Quadruplex, Thallium, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. L. Gill, S. A. Strobel, J. P. Loria
Crystallization And Characterization Of The Thallium Form Of The Oxytricha Nova G-Quadruplex.
Nucleic Acids Res. V. 34 4506 2006
PubMed-ID: 16945956  |  Reference-DOI: 10.1093/NAR/GKL616
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'
    Chains: A, B, C, D
    Engineered: YES
    Other Details: THIS SEQUENCE OCCURS NATURALLY IN STERKIELLA NOVA TELOMERE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric Unit (1, 10)
No.NameCountTypeFull Name
1TL10Ligand/IonTHALLIUM (I) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1TL-1Ligand/IonTHALLIUM (I) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1TL-1Ligand/IonTHALLIUM (I) ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREDG A:1 , DG A:12 , TL A:116 , DG B:4 , DT B:5 , DT B:7 , DG B:9BINDING SITE FOR RESIDUE TL B 113
02AC2SOFTWAREDG A:2 , DG A:3 , DG A:10 , DG A:11 , TL A:115 , TL A:116 , DG B:2 , DG B:3 , DG B:10 , DG B:11BINDING SITE FOR RESIDUE TL A 114
03AC3SOFTWAREDG A:3 , DG A:4 , DG A:9 , DG A:10 , TL A:114 , TL A:117 , DG B:1 , DG B:2 , DG B:11 , DG B:12BINDING SITE FOR RESIDUE TL A 115
04AC4SOFTWAREDG A:1 , DG A:2 , DG A:11 , DG A:12 , TL A:114 , DG B:3 , DG B:4 , DG B:9 , DG B:10 , TL B:113BINDING SITE FOR RESIDUE TL A 116
05AC5SOFTWAREDG A:4 , DT A:5 , DT A:7 , DG A:9 , TL A:115 , HOH A:118 , DG B:1 , DG B:12BINDING SITE FOR RESIDUE TL A 117
06AC6SOFTWAREDG C:2 , DG C:3 , DG C:10 , DG C:11 , TL C:119 , TL C:120 , DG D:2 , DG D:3 , DG D:10 , DG D:11BINDING SITE FOR RESIDUE TL C 118
07AC7SOFTWAREDG C:1 , DG C:2 , DG C:11 , DG C:12 , TL C:118 , DG D:3 , DG D:4 , DG D:9 , DG D:10BINDING SITE FOR RESIDUE TL C 119
08AC8SOFTWAREDG C:3 , DG C:4 , DG C:9 , DG C:10 , TL C:118 , TL C:122 , DG D:1 , DG D:2 , DG D:11 , DG D:12BINDING SITE FOR RESIDUE TL C 120
09AC9SOFTWAREDG C:1 , DG C:12 , DG D:4 , DT D:5 , DT D:6 , DT D:7 , DG D:9BINDING SITE FOR RESIDUE TL D 121
10BC1SOFTWAREDG C:4 , DT C:5 , DT C:7 , DG C:9 , TL C:120 , DG D:1 , DG D:12BINDING SITE FOR RESIDUE TL C 122

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2HBN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2HBN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2HBN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2HBN)

(-) Exons   (0, 0)

(no "Exon" information available for 2HBN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  2hbn A  1 GGGGTTTTGGGG 12
                                    10  


Chain B from PDB  Type:DNA  Length:12
                                           
                  2hbn B  1 GGGGTTTTGGGG 12
                                    10  


Chain C from PDB  Type:DNA  Length:12
                                           
                  2hbn C  1 GGGGTTTTGGGG 12
                                    10  


Chain D from PDB  Type:DNA  Length:12
                                           
                  2hbn D  1 GGGGTTTTGGGG 12
                                    10
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2HBN)

(-) CATH Domains  (0, 0)

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(-) Related Entries Specified in the PDB File

1jrn CRYSATL STRUCTURE OF ORTHORHOMBIC FORM OF OXYTRICHA TELOMERIC DNA AT 2.0 A
2akg SOLUTION STRUCTURE OF THE THALLIUM FORM OF THE G-QUADRUPLEX FROM OXYTRICHA NOVA, D(G4T4G4)2