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(-) Description

Title :  SYNTHESIS, OXIDATION BEHAVIOR, CRYSTALLIZATION AND STRUCTURE OF 2'-METHYLSELENO GUANOSINE CONTAINING RNAS
 
Authors :  A. A. Serganov
Date :  16 May 06  (Deposition) - 18 Jul 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  A-Rna Structure, Mismatch A Rna, Ribonucleic Acid, Se 2'-Methylse, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Moroder, C. Kreutz, K. Lang, A. Serganov, R. Micura
Synthesis, Oxidation Behavior, Crystallization And Structur Of 2'-Methylseleno Guanosine Containing Rnas.
J. Am. Chem. Soc. V. 128 9909 2006
PubMed-ID: 16866550  |  Reference-DOI: 10.1021/JA0621400
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-R(*GP*CP*AP*(XUG)P*AP*GP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)- 3'
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
2XUG2Mod. Nucleotide2'-SE-METHYL-2'-SELENOGUANOSINE 5'-(DIHYDROGENPHOSPHATE)

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREC A:2 , C B:29BINDING SITE FOR RESIDUE SO4 A 17
2AC2SOFTWAREC B:18 , A B:19BINDING SITE FOR RESIDUE SO4 B 2
3AC3SOFTWAREG A:1 , C A:16BINDING SITE FOR RESIDUE SO4 A 18

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2H1M)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA/RNA  Length:16
                                               
                  2h1m A  1 GCAgAGUUAAAUCUGC 16
                               |    10      
                               |            
                               4-XUG        


Chain B from PDB  Type:DNA/RNA  Length:16
                                               
                  2h1m B 17 GCAgAGUUAAAUCUGC 32
                               |    26      
                              20-XUG
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2H1M)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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