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Title :   MODEL STRUCTURE OF DNA DODECAMER D(GCCTGTTAGCG) BOUND TO HAIRPIN POLYAMIDE IM-PY-PY-GAMMA-PY-PY-PY-BETA-DP

Authors :   Saher A Shaikh

Date :   09 May 06 (Deposition) - 17 Oct 06 (Release) - 17 Oct 06 (Revision)

Method :   THEORETICAL MODEL

Resolution :   NOT APPLICABLE

Chains :   Theor. Model : A,B,_^#
( ^#: chains that contain no standard or modified protein/DNA/RNA residue)

Keywords :   Model Built, Minor Groove Binding, Dna-Drug, Hairpin Polyamide, Imidazole Pyrrole Polyamide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Saher A Shaikh, B Jayaram
A Swift All-Atom Energy Based Computational Protocol To Predict Dna-Drug Binding Affinity And Deltatm
To Be Published 2006
PubMed: search
(for further references see the PDB file header)

Compounds

*Molecule 1 - DNA 5'-D(GPCPCPTPGPTPTPAPGPCPG)-3'**
	Chains	:	A
	Engineered	:	YES
	Other Details	:	MODEL BUILT
	Synthetic	:	YES

*Molecule 2 - DNA 5'-D(CPGPCPTPAPAPCPAPGPGPC)-3'**
	Chains	:	B
	Engineered	:	YES
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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Chain A from PDB  Type:DNA  Length:11
                                          
                  2gym A  1 GCCTGTTAGCG 11
                                    10

Chain B from PDB  Type:DNA  Length:11
                                          
                  2gym B 12 CGCTAACAGGC 22
                                    21

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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