2GWE - JenaLib

Title :   CRYSTAL STRUCTURE OF D(G4T4G4) WITH SIX QUADRUPLEXES IN THE ASYMMETRIC UNIT.

Authors :   M. P. H. Lee, S. Haider, G. N. Parkinson, S. Neidle

Date :   04 May 06 (Deposition) - 19 Jun 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: G,H  (1x)
Biol. Unit 5: I,J  (1x)
Biol. Unit 6: K,L  (1x)

Keywords :   Oxytricha, G-Quartet, G-Quadruplex, G-Tetrad, G-Tetraplex, Six Quadruplexes, Asymmetric Unit. , Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. P. H. Lee, S. Haider, G. N. Parkinson, S. Neidle
Crystal Structure Of D(G4T4G4) With Four And Six Quadruplexes In The Asymmetric Unit.
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 30)

Sites (30, 30)

Asymmetric Unit (30, 30)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	DG C:28 , DT C:29 , DT C:31 , DG C:33 , K C:146 , HOH C:211 , DG D:37 , DG D:48	BINDING SITE FOR RESIDUE K C 145
02	AC2	SOFTWARE	DG C:27 , DG C:28 , DG C:33 , DG C:34 , K C:145 , K C:147 , DG D:37 , DG D:38 , DG D:47 , DG D:48	BINDING SITE FOR RESIDUE K C 146
03	AC3	SOFTWARE	DG C:26 , DG C:27 , DG C:34 , DG C:35 , K C:146 , K C:148 , DG D:38 , DG D:39 , DG D:46 , DG D:47	BINDING SITE FOR RESIDUE K C 147
04	AC4	SOFTWARE	DG C:25 , DG C:26 , DG C:35 , DG C:36 , K C:147 , DG D:39 , DG D:40 , DG D:45 , DG D:46 , K D:149	BINDING SITE FOR RESIDUE K C 148
05	AC5	SOFTWARE	DG C:25 , DG C:36 , K C:148 , DG D:40 , DT D:41 , DT D:43 , DG D:45 , HOH D:197	BINDING SITE FOR RESIDUE K D 149
06	AC6	SOFTWARE	DG E:49 , DG E:60 , K E:151 , DG F:64 , DT F:65 , DT F:67 , DG F:69 , HOH F:206 , HOH F:208	BINDING SITE FOR RESIDUE K F 150
07	AC7	SOFTWARE	DG E:49 , DG E:50 , DG E:59 , DG E:60 , DG F:63 , DG F:64 , DG F:69 , DG F:70 , K F:150 , K F:152	BINDING SITE FOR RESIDUE K E 151
08	AC8	SOFTWARE	DG E:50 , DG E:51 , DG E:58 , DG E:59 , K E:151 , K E:153 , DG F:62 , DG F:63 , DG F:70 , DG F:71	BINDING SITE FOR RESIDUE K F 152
09	AC9	SOFTWARE	DG E:51 , DG E:52 , DG E:57 , DG E:58 , K E:154 , DG F:61 , DG F:62 , DG F:71 , DG F:72 , K F:152	BINDING SITE FOR RESIDUE K E 153
10	BC1	SOFTWARE	DG E:52 , DT E:53 , DT E:55 , DG E:57 , K E:153 , HOH E:176 , HOH E:269 , DG F:61 , DG F:72	BINDING SITE FOR RESIDUE K E 154
11	BC2	SOFTWARE	DG I:97 , DG I:108 , K I:156 , DG J:112 , DT J:113 , DT J:115 , DG J:117 , HOH J:175	BINDING SITE FOR RESIDUE K J 155
12	BC3	SOFTWARE	DG I:97 , DG I:98 , DG I:107 , DG I:108 , DG J:111 , DG J:112 , DG J:117 , DG J:118 , K J:155 , K J:157	BINDING SITE FOR RESIDUE K I 156
13	BC4	SOFTWARE	DG I:98 , DG I:99 , DG I:106 , DG I:107 , K I:156 , DG J:110 , DG J:111 , DG J:118 , DG J:119 , K J:158	BINDING SITE FOR RESIDUE K J 157
14	BC5	SOFTWARE	DG I:99 , DG I:100 , DG I:105 , DG I:106 , K I:159 , DG J:109 , DG J:110 , DG J:119 , DG J:120 , K J:157	BINDING SITE FOR RESIDUE K J 158
15	BC6	SOFTWARE	DG I:100 , DT I:101 , DT I:103 , DG I:105 , DG J:109 , DG J:120 , K J:158 , HOH J:198	BINDING SITE FOR RESIDUE K I 159
16	BC7	SOFTWARE	DG A:1 , DG A:12 , K A:161 , DG B:16 , DT B:17 , DT B:19 , DG B:21 , HOH B:177	BINDING SITE FOR RESIDUE K B 160
17	BC8	SOFTWARE	DG A:1 , DG A:2 , DG A:11 , DG A:12 , K A:162 , DG B:15 , DG B:16 , DG B:21 , DG B:22 , K B:160	BINDING SITE FOR RESIDUE K A 161
18	BC9	SOFTWARE	DG A:2 , DG A:3 , DG A:10 , DG A:11 , K A:161 , K A:163 , DG B:14 , DG B:15 , DG B:22 , DG B:23	BINDING SITE FOR RESIDUE K A 162
19	CC1	SOFTWARE	DG A:3 , DG A:4 , DG A:9 , DG A:10 , K A:162 , K A:164 , DG B:13 , DG B:14 , DG B:23 , DG B:24	BINDING SITE FOR RESIDUE K A 163
20	CC2	SOFTWARE	DG A:4 , DT A:5 , DT A:7 , DG A:9 , K A:163 , HOH A:195 , HOH A:227 , DG B:13 , DG B:24	BINDING SITE FOR RESIDUE K A 164
21	CC3	SOFTWARE	DG G:73 , DG G:84 , K G:166 , DG H:88 , DT H:89 , DT H:91 , DG H:93 , HOH H:180 , HOH H:193	BINDING SITE FOR RESIDUE K H 165
22	CC4	SOFTWARE	DG G:73 , DG G:74 , DG G:83 , DG G:84 , K G:167 , DG H:87 , DG H:88 , DG H:93 , DG H:94 , K H:165	BINDING SITE FOR RESIDUE K G 166
23	CC5	SOFTWARE	DG G:74 , DG G:75 , DG G:82 , DG G:83 , K G:166 , K G:168 , DG H:86 , DG H:87 , DG H:94 , DG H:95	BINDING SITE FOR RESIDUE K G 167
24	CC6	SOFTWARE	DG G:75 , DG G:76 , DG G:81 , DG G:82 , K G:167 , K G:169 , DG H:85 , DG H:86 , DG H:95 , DG H:96	BINDING SITE FOR RESIDUE K G 168
25	CC7	SOFTWARE	DG G:76 , DT G:77 , DT G:79 , DG G:81 , K G:168 , HOH G:235 , DG H:85 , DG H:96	BINDING SITE FOR RESIDUE K G 169
26	CC8	SOFTWARE	DG K:124 , DT K:125 , DT K:127 , DG K:129 , K K:171 , HOH K:182 , HOH K:190 , DG L:133 , DG L:144	BINDING SITE FOR RESIDUE K K 170
27	CC9	SOFTWARE	DG K:123 , DG K:124 , DG K:129 , DG K:130 , K K:170 , K K:172 , DG L:133 , DG L:134 , DG L:143 , DG L:144	BINDING SITE FOR RESIDUE K K 171
28	DC1	SOFTWARE	DG K:122 , DG K:123 , DG K:130 , DG K:131 , K K:171 , DG L:134 , DG L:135 , DG L:142 , DG L:143 , K L:173	BINDING SITE FOR RESIDUE K K 172
29	DC2	SOFTWARE	DG K:121 , DG K:122 , DG K:131 , DG K:132 , K K:172 , DG L:135 , DG L:136 , DG L:141 , DG L:142 , K L:174	BINDING SITE FOR RESIDUE K L 173
30	DC3	SOFTWARE	DG K:121 , DG K:132 , HOH K:178 , DG L:136 , DT L:137 , DT L:139 , DG L:141 , K L:173	BINDING SITE FOR RESIDUE K L 174

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA  Length:12
                                            
                 2gwe A   1 GGGGTTTTGGGG  12
                                    10

Chain B from PDB  Type:DNA  Length:12
                                            
                 2gwe B  13 GGGGTTTTGGGG  24
                                    22

Chain C from PDB  Type:DNA  Length:12
                                            
                 2gwe C  25 GGGGTTTTGGGG  36
                                    34

Chain D from PDB  Type:DNA  Length:12
                                            
                 2gwe D  37 GGGGTTTTGGGG  48
                                    46

Chain E from PDB  Type:DNA  Length:12
                                            
                 2gwe E  49 GGGGTTTTGGGG  60
                                    58

Chain F from PDB  Type:DNA  Length:12
                                            
                 2gwe F  61 GGGGTTTTGGGG  72
                                    70

Chain G from PDB  Type:DNA  Length:12
                                            
                 2gwe G  73 GGGGTTTTGGGG  84
                                    82

Chain H from PDB  Type:DNA  Length:12
                                            
                 2gwe H  85 GGGGTTTTGGGG  96
                                    94

Chain I from PDB  Type:DNA  Length:12
                                            
                 2gwe I  97 GGGGTTTTGGGG 108
                                   106

Chain J from PDB  Type:DNA  Length:12
                                            
                 2gwe J 109 GGGGTTTTGGGG 120
                                   118

Chain K from PDB  Type:DNA  Length:12
                                            
                 2gwe K 121 GGGGTTTTGGGG 132
                                   130

Chain L from PDB  Type:DNA  Length:12
                                            
                 2gwe L 133 GGGGTTTTGGGG 144
                                   142

Legend:		→ Mismatch	(orange background)
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Classification and Annotation

SCOP Domains (0, 0)

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Pfam Domains (0, 0)

Gene Ontology (0, 0)

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