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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE ADENYLATE CYCLASE (BH2851) FROM BACILLUS HALODURANS AT 2.12 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  21 Mar 06  (Deposition) - 02 May 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.12
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Antiparallel Barrel, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of The Protein Bh2851 (10175472) From Bacillus Halodurans At 2. 12 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BH2851
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: 10175472
    Organism Scientific: BACILLUS HALODURANS
    Organism Taxid: 86665

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 29)

Asymmetric Unit (5, 29)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2EDO16Ligand/Ion1,2-ETHANEDIOL
3MSE6Mod. Amino AcidSELENOMETHIONINE
4NA1Ligand/IonSODIUM ION
5UNL3Ligand/IonUNKNOWN LIGAND
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO4Ligand/Ion1,2-ETHANEDIOL
3MSE2Mod. Amino AcidSELENOMETHIONINE
4NA-1Ligand/IonSODIUM ION
5UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 2 (3, 11)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO8Ligand/Ion1,2-ETHANEDIOL
3MSE2Mod. Amino AcidSELENOMETHIONINE
4NA-1Ligand/IonSODIUM ION
5UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 3 (3, 7)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO4Ligand/Ion1,2-ETHANEDIOL
3MSE2Mod. Amino AcidSELENOMETHIONINE
4NA-1Ligand/IonSODIUM ION
5UNL1Ligand/IonUNKNOWN LIGAND

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS B:71 , HOH B:543 , HOH B:545 , HOH B:551 , HOH B:600 , SER C:172BINDING SITE FOR RESIDUE NA B 193
02AC2SOFTWARESER A:141BINDING SITE FOR RESIDUE CL A 193
03AC3SOFTWAREHIS B:139BINDING SITE FOR RESIDUE CL B 194
04AC4SOFTWARESER C:124 , HIS C:139BINDING SITE FOR RESIDUE CL C 193
05AC5SOFTWAREGLU A:8 , ARG A:55 , ARG A:57 , ARG A:125 , GLU A:151 , LYS A:181 , EDO A:503 , HOH A:588BINDING SITE FOR RESIDUE UNL A 500
06AC6SOFTWAREARG B:57 , LYS B:68 , GLU B:77 , ARG B:125BINDING SITE FOR RESIDUE UNL B 500
07AC7SOFTWAREGLU C:8 , ARG C:55 , ARG C:57BINDING SITE FOR RESIDUE UNL C 500
08AC8SOFTWAREHIS A:26 , SER B:93 , HIS B:95 , GLU B:127 , HOH B:562BINDING SITE FOR RESIDUE EDO B 501
09AC9SOFTWAREGLY A:2 , THR A:64 , ASN A:79 , THR A:81 , ARG C:36 , EDO C:502BINDING SITE FOR RESIDUE EDO C 501
10BC1SOFTWAREARG A:57 , LYS A:59 , THR A:64BINDING SITE FOR RESIDUE EDO A 501
11BC2SOFTWAREHIS C:38 , HIS C:117 , THR C:120 , EDO C:501 , HOH C:516BINDING SITE FOR RESIDUE EDO C 502
12BC3SOFTWAREGLU B:6 , GLU B:8 , ARG B:9 , GLU B:157BINDING SITE FOR RESIDUE EDO B 502
13BC4SOFTWAREGLU B:131 , GLN B:132 , GLY B:133 , PHE B:152 , GLY B:154 , THR B:155 , HIS B:159 , THR B:163BINDING SITE FOR RESIDUE EDO B 503
14BC5SOFTWAREGLU C:131 , GLN C:132 , GLY C:133 , PHE C:152 , GLY C:154 , THR C:155 , HIS C:159 , THR C:163 , HOH C:569BINDING SITE FOR RESIDUE EDO C 503
15BC6SOFTWAREPHE A:32 , SER A:124 , HIS A:139 , HOH A:519 , HOH A:587BINDING SITE FOR RESIDUE EDO A 502
16BC7SOFTWARELEU C:34 , GLU C:60 , HOH C:524BINDING SITE FOR RESIDUE EDO C 504
17BC8SOFTWAREGLU A:8 , GLU A:149 , GLU A:151 , ASN A:180 , LYS A:181 , ARG A:184 , UNL A:500 , HOH A:538BINDING SITE FOR RESIDUE EDO A 503
18BC9SOFTWARELEU B:12 , SER B:14BINDING SITE FOR RESIDUE EDO B 504
19CC1SOFTWAREGLU A:166 , LYS A:169 , THR B:170 , HOH B:588 , HOH B:602BINDING SITE FOR RESIDUE EDO B 505
20CC2SOFTWAREGLN A:24 , HOH A:585 , TYR B:130 , GLU B:131BINDING SITE FOR RESIDUE EDO B 506
21CC3SOFTWAREGLN A:132 , GLY A:154 , THR A:155 , SER A:156 , HIS A:159 , THR A:163BINDING SITE FOR RESIDUE EDO A 504
22CC4SOFTWAREARG B:36 , THR B:64 , ASN B:79 , THR B:81BINDING SITE FOR RESIDUE EDO B 507
23CC5SOFTWAREHIS B:71 , PRO B:72 , ALA B:73BINDING SITE FOR RESIDUE EDO B 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GFG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GFG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GFG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GFG)

(-) Exons   (0, 0)

(no "Exon" information available for 2GFG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:191
 aligned with Q9K901_BACHD | Q9K901 from UniProtKB/TrEMBL  Length:192

    Alignment length:191
                             1                                                                                                                                                                                             
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189 
         Q9K901_BACHD     - -MGKEIEIERKTLVSKETFKRLISQLHIGEGDFKLQRNHYFETDDFQLKKQSSALRIREKEAIFTFTLKQPHPAGLLETNQTLSKQEAKLALESAHFPSGEVMDALRDLSIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQVPTENKIQRFFSKKE 190
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeehhhhhhhhhhhh..hhhhheeeeeeeee...hhhhhh..eeeeeee..eeeeeeeee....eeeeeeeehhhhhhhhhhhh....hhhhhhhhhh..hhhhheeeeeeeeeeeeeee..eeeeeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhh........hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gfg A   0 GmGKEIEIERKTLVSKETFKRLISQLHIGEGDFKLQRNHYFETDDFQLKKQSSALRIREKEAIFTFTLKQPHPAGLLETNQTLSKQEAKLALESAHFPSGEVmDALRDLSIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQVPTENKIQRFFSKKE 190
                             |       9        19        29        39        49        59        69        79        89        99  |    109       119       129       139       149       159       169       179       189 
                             |                                                                                                  102-MSE                                                                                    
                             1-MSE                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:188
 aligned with Q9K901_BACHD | Q9K901 from UniProtKB/TrEMBL  Length:192

    Alignment length:188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
         Q9K901_BACHD     1 MGKEIEIERKTLVSKETFKRLISQLHIGEGDFKLQRNHYFETDDFQLKKQSSALRIREKEAIFTFTLKQPHPAGLLETNQTLSKQEAKLALESAHFPSGEVMDALRDLSIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQVPTENKIQRFFSK 188
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeehhhhhhhhhhhh..hhhhheeeeeeeee...hhhhhh..eeeeeee..eeeeeeeee....eeeeeeeehhhhhhhhhhhh....hhhhhhhhhh..hhhhheeeeeeeeeeeeeee..eeeeeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhh........hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gfg B   1 mGKEIEIERKTLVSKETFKRLISQLHIGEGDFKLQRNHYFETDDFQLKKQSSALRIREKEAIFTFTLKQPHPAGLLETNQTLSKQEAKLALESAHFPSGEVmDALRDLSIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQVPTENKIQRFFSK 188
                            |       10        20        30        40        50        60        70        80        90       100 |     110       120       130       140       150       160       170       180        
                            1-MSE                                                                                              102-MSE                                                                                  


Chain C from PDB  Type:PROTEIN  Length:187
 aligned with Q9K901_BACHD | Q9K901 from UniProtKB/TrEMBL  Length:192

    Alignment length:187
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       
         Q9K901_BACHD     1 MGKEIEIERKTLVSKETFKRLISQLHIGEGDFKLQRNHYFETDDFQLKKQSSALRIREKEAIFTFTLKQPHPAGLLETNQTLSKQEAKLALESAHFPSGEVMDALRDLSIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQVPTENKIQRFFS 187
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeeeehhhhhhhhhhhh..hhh.eeeeeeeeee...hhhhhh..eeeeeee..eeeeeeeee....eeeeeeeehhhhhhhhhhhh....hhhhhhhhhh.......eeeeeeeeeeeeeee..eeeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhh........hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gfg C   1 mGKEIEIERKTLVSKETFKRLISQLHIGEGDFKLQRNHYFETDDFQLKKQSSALRIREKEAIFTFTLKQPHPAGLLETNQTLSKQEAKLALESAHFPSGEVmDALRDLSIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQVPTENKIQRFFS 187
                            |       10        20        30        40        50        60        70        80        90       100 |     110       120       130       140       150       160       170       180       
                            1-MSE                                                                                              102-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2GFG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2GFG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GFG)

(-) Gene Ontology  (0, 0)

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