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(-) Description

Title :  AN ENERGETIC EVALUATION OF A "SMITH" COLLAGEN MICROFIBRIL MODEL
 
Authors :  J. M. Chen
Date :  19 Aug 91  (Deposition) - 31 Jan 94  (Release) - 01 Apr 03  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B,C
Keywords :  Glycoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Chen, C. E. Kung, S. H. Feairheller, E. M. Brown
An Energetic Evaluation Of A "Smith" Collagen Microfibril Model.
J. Protein Chem. V. 10 535 1991
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COLLAGEN
    Chains: A, B, C
    Engineered: YES

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 42)

Theoretical Model (3, 42)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP
2HYP36Mod. Amino Acid4-HYDROXYPROLINE
3NME3Mod. Amino AcidMETHYLAMINE

(-) Sites  (0, 0)

(no "Site" information available for 2CLG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CLG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2CLG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CLG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2CLG)

(-) Exons   (0, 0)

(no "Exon" information available for 2CLG)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:38
 aligned with STP_SHV24 | P25050 from UniProtKB/Swiss-Prot  Length:105

    Alignment length:50
                                    29        39        49        59        69
             STP_SHV24   20 QGPPGPPGPQGPPGPQGPPGPQGPPGPQGPPGPQGPPGPQGPPGPPGPPG 69
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ..........................---....---------........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                  2clg A  0 xGPpGPpGPpGPpGPpGPpGPpGPpG---PpGP---------pGPpGPpx 37
                            |  |  |  9  |  |  19 |  ||  26| |      -  |  |  37
                            |  |  |  |  |  |  |  |  25  26| |        30-HYP ||
                            0-ACE |  |  |  |  |  |  |    27-HYP         33-HYP
                               3-HYP |  |  |  |  |  |      29              36-HYP
                                  6-HYP |  |  |  |  |                       37-NME
                                     9-HYP |  |  |  |                         
                                       12-HYP |  |  |                         
                                          15-HYP |  |                         
                                             18-HYP |                         
                                                21-HYP                        


Chain B from PDB  Type:PROTEIN  Length:38
 aligned with STP_SHV24 | P25050 from UniProtKB/Swiss-Prot  Length:105

    Alignment length:50
                                    29        39        49        59        69
             STP_SHV24   20 QGPPGPPGPQGPPGPQGPPGPQGPPGPQGPPGPQGPPGPQGPPGPPGPPG 69
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ..........................---....---------........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                  2clg B  0 xGPpGPpGPpGPpGPpGPpGPpGPpG---PpGP---------pGPpGPpx 37
                            |  |  |  9  |  |  19 |  ||  26| |      -  |  |  37
                            |  |  |  |  |  |  |  |  25  26| |        30-HYP ||
                            0-ACE |  |  |  |  |  |  |    27-HYP         33-HYP
                               3-HYP |  |  |  |  |  |      29              36-HYP
                                  6-HYP |  |  |  |  |                       37-NME
                                     9-HYP |  |  |  |                         
                                       12-HYP |  |  |                         
                                          15-HYP |  |                         
                                             18-HYP |                         
                                                21-HYP                        


Chain C from PDB  Type:PROTEIN  Length:38
 aligned with STP_SHV24 | P25050 from UniProtKB/Swiss-Prot  Length:105

    Alignment length:50
                                    29        39        49        59        69
             STP_SHV24   20 QGPPGPPGPQGPPGPQGPPGPQGPPGPQGPPGPQGPPGPQGPPGPPGPPG 69
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ..........................---....---------........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                  2clg C  0 xGPpGPpGPpGPpGPpGPpGPpGPpG---PpGP---------pGPpGPpx 37
                            |  |  |  9  |  |  19 |  ||  26| |      -  |  |  37
                            |  |  |  |  |  |  |  |  25  26| |        30-HYP ||
                            0-ACE |  |  |  |  |  |  |    27-HYP         33-HYP
                               3-HYP |  |  |  |  |  |      29              36-HYP
                                  6-HYP |  |  |  |  |                       37-NME
                                     9-HYP |  |  |  |                         
                                       12-HYP |  |  |                         
                                          15-HYP |  |                         
                                             18-HYP |                         
                                                21-HYP
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2CLG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2CLG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CLG)

(-) Gene Ontology  (4, 4)

Theoretical Model(hide GO term definitions)
Chain A,B,C   (STP_SHV24 | P25050)
biological process
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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        STP_SHV24 | P25050: 4clg

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