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(-) Description

Title :  MOLECULAR DYNAMICS ANALYSIS OF OVINE AND BOVINE ISG15
 
Authors :  S. Nelson, C. M. Sorensen, T. R. Hansen
Date :  19 Jul 05  (Deposition) - 15 Nov 06  (Release) - 15 Nov 06  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Ubiquitin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Sorensen, L. A. Rempel, B. R. Francis, D. J. Perry, S. Nelson, R. V. Lewis, A. L. Haas, T. R. Hansen
The Hinge Region Between Two Ubiquitin-Like Domains Destabilizes Recombinant Isg15 In Solution
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - INTERFERON STIMULATED GENE 17
    Chains: A
    Engineered: YES
    Mutation: YES
    Synonym: ISG15
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2BX1)

(-) Sites  (0, 0)

(no "Site" information available for 2BX1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2BX1)

(-) Cis Peptide Bonds  (1, 1)

Theoretical Model
No.Residues
1Ala A:46 -His A:47

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BX1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2BX1)

(-) Exons   (0, 0)

(no "Exon" information available for 2BX1)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:152
 aligned with Q9GKP4_SHEEP | Q9GKP4 from UniProtKB/TrEMBL  Length:157

    Alignment length:152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  
         Q9GKP4_SHEEP     1 MGGDLKVKMLGGEEILVPLRDSMMVSELKQFIAQKINVPAFQQRLAHLDSREVLQEGVPLVHQGLKAGSTILLMVQNCSATLNILVRNDKGRSSSYEVQLTQTVAVLKQQVCQRERVQADQFWLSFEGKPMDDEHPLGEYGLTTGCTVFMNL 152
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.........ee.........hhhhhhhhhhh.hhhhh..ee...........hhhhhhhhh...ee..........eeeeee.....eeee.....hhhhhhhhhhhhhh......eee.......................eee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bx1 A   1 MGGDLKVKMLGGEEILVPLRDSMMVSELKQFIAQKINVPAFQQRLAHLDSREVLQEGVPLVHQGLKAGSTILLMVQNSSATLNILVRNDKGRSSSYEVQLTQTVAVLKQQVCQRERVQADQFWLSFEGKPMDDEHPLGEYGLTTGCTVFMNL 152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2BX1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2BX1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BX1)

(-) Gene Ontology  (0, 0)

Theoretical Model(hide GO term definitions)
    (no "Gene Ontology" information available for 2BX1)

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  Cis Peptide Bonds
    Ala A:46 - His A:47   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9GKP4_SHEEP | Q9GKP4: 2bwz

(-) Related Entries Specified in the PDB File

2bwz MOLECULAR DYNAMICS ANALYSIS OF OVINE AND BOVINE ISG15
2bx0 MOLECULAR DYNAMICS ANALYSIS OF OVINE AND BOVINE ISG15