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(-) Description

Title :  STRUCTURE OF HIV-1(LAI) GENOMIC RNA DIS
 
Authors :  E. Ennifar, P. Walter, B. Ehresmann, C. Ehresmann, P. Dumas
Date :  10 Oct 05  (Deposition) - 25 Oct 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hiv-1, Rna, Hairpin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Ennifar, P. Walter, B. Ehresmann, C. Ehresmann, P. Dumas
Crystal Structures Of Coaxially Stacked Kissing Complexes Of The Hiv-1 Rna Dimerization Initiation Site
Nat. Struct. Biol. V. 8 1064 2001
PubMed-ID: 11702070  |  Reference-DOI: 10.1038/NSB727
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP *CP*AP*AP*G)-3'
    Chains: A, B
    Engineered: YES
    Other Details: HIV-1 DNS RNA
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1MG6Ligand/IonMAGNESIUM ION
2NA1Ligand/IonSODIUM ION
3SO45Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHOH A:251BINDING SITE FOR RESIDUE MG A 101
02AC2SOFTWAREG A:10 , C A:11 , HOH A:296BINDING SITE FOR RESIDUE SO4 A 103
03AC3SOFTWAREA B:8 , A B:9 , HOH B:247 , HOH B:298BINDING SITE FOR RESIDUE SO4 B 104
04AC4SOFTWAREHOH B:257BINDING SITE FOR RESIDUE MG B 105
05AC5SOFTWAREC B:1 , U B:2BINDING SITE FOR RESIDUE NA B 106
06AC6SOFTWAREC A:5 , A A:16 , G B:10 , C B:11BINDING SITE FOR RESIDUE SO4 B 107
07AC7SOFTWAREC A:1 , HOH A:253BINDING SITE FOR RESIDUE SO4 A 108
08AC8SOFTWAREC B:1BINDING SITE FOR RESIDUE SO4 B 109
09AC9SOFTWAREHOH B:278BINDING SITE FOR RESIDUE MG B 110
10BC1SOFTWAREG A:23BINDING SITE FOR RESIDUE MG A 111

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2B8R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2B8R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2B8R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2B8R)

(-) Exons   (0, 0)

(no "Exon" information available for 2B8R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:23
                                                      
                  2b8r A  1 CUUGCUGAAGCGCGCACGGCAAG 23
                                    10        20   


Chain B from PDB  Type:RNA  Length:23
                                                      
                  2b8r B  1 CUUGCUGAAGCGCGCACGGCAAG 23
                                    10        20
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2B8R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2B8R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2B8R)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2B8R)

(-) Related Entries Specified in the PDB File

1xp7 HIV-1 SUBTYPE-F DIS RNA LOOP-LOOP COMPLEX
1xpe HIV-1 SUBTYPE-B DIS RNA LOOP-LOOP COMPLEX
1xpf HIV-1 SUBTYPE-A DIS RNA LOOP-LOOP COMPLEX
1y3s HIV-1 SUBTYPE-F DIS RNA LOOP-LOOP COMPLEX
1zci HIV-1 SUBTYPE-F DIS RNA LOOP-LOOP COMPLEX
2b8s