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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROTEIN ATU5096 FROM AGROBACTERIUM TUMEFACIENS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ATR63.
 
Authors :  F. Forouhar, M. Abashidze, A. P. Kuzin, S. M. Vorobiev, R. Shastry, B. Co T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structur Genomics Consortium (Nesg)
Date :  22 Jul 05  (Deposition) - 02 Aug 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Alpha-Beta Protein. , Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, M. Abashidze, A. P. Kuzin, S. M. Vorobiev, R. Shastry, B. Cooper, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of The Hypothetical Protein Atu5096 From Agrobacterium Tumefaciens.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN AGR_PAT_140
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BL21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PET21
    Fragment: ATU5096
    Gene: ATU5096
    Organism Scientific: AGROBACTERIUM TUMEFACIENS STR.
    Organism Taxid: 176299
    Strain: C58

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 24)

Asymmetric Unit (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2AEG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2AEG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2AEG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2AEG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2AEG)

(-) Exons   (0, 0)

(no "Exon" information available for 2AEG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
 aligned with A9CLP4_AGRFC | A9CLP4 from UniProtKB/TrEMBL  Length:257

    Alignment length:243
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241   
         A9CLP4_AGRFC     2 CNLYRMEDKDWVSKWAQDAESLINLMPAYQMNPDQMGPIVRNTADGKKQLVHARWGLPSPIFVQKKAAEARADKLKAKGKAFDINELIRMEPDRGVTNVRKLNLPHWTRWFGVEHRCLVPVTSFAEPDPASKQEGGNVPNAWFARDEAKSLMFFAGIHVPQWKSVRKVRDGLTTDDLYGFLTTDPNDLVKPIHEKAMPVLLLTREETEIWMRAPWDEAKHLARPLPNDALIILSREPYGSSIV 244
               SCOP domains d2aega1 A:2-244 Hypothetical protein Atu5096                                                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....hhhhhh...ee.......eee....eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhh.....hhhhhhhhh......ee....hhhhhhhhhhh.eeeeee.eeeee............eeeee.......eeeeeeeeeeeee..hhhhh.eeeeeeeeeee.............ee.ee.hhhhhhhhhhhhhhhhhhhh........eeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2aeg A   2 CNLYRmEDKDWVSKWAQDAESLINLmPAYQmNPDQmGPIVRNTADGKKQLVHARWGLPSPIFVQKKAAEARADKLKAKGKAFDINELIRmEPDRGVTNVRKLNLPHWTRWFGVEHRCLVPVTSFAEPDPASKQEGGNVPNAWFARDEAKSLmFFAGIHVPQWKSVRKVRDGLTTDDLYGFLTTDPNDLVKPIHEKAmPVLLLTREETEIWmRAPWDEAKHLARPLPNDALIILSREPYGSSIV 244
                                 |  11        21     |  31|    |  41        51        61        71        81        91       101       111       121       131       141       151 |     161       171       181       191      |201       211|      221       231       241   
                                 7-MSE              27-MSE|    |                                                    91-MSE                                                       153-MSE                                      198-MSE       212-MSE                            
                                                         32-MSE|                                                                                                                                                                                                               
                                                              37-MSE                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:243
 aligned with A9CLP4_AGRFC | A9CLP4 from UniProtKB/TrEMBL  Length:257

    Alignment length:243
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241   
         A9CLP4_AGRFC     2 CNLYRMEDKDWVSKWAQDAESLINLMPAYQMNPDQMGPIVRNTADGKKQLVHARWGLPSPIFVQKKAAEARADKLKAKGKAFDINELIRMEPDRGVTNVRKLNLPHWTRWFGVEHRCLVPVTSFAEPDPASKQEGGNVPNAWFARDEAKSLMFFAGIHVPQWKSVRKVRDGLTTDDLYGFLTTDPNDLVKPIHEKAMPVLLLTREETEIWMRAPWDEAKHLARPLPNDALIILSREPYGSSIV 244
               SCOP domains d2aegb_ B: Hypothetical protein Atu5096                                                                                                                                                                                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....hhhhhh...ee.......eee....eeeeeee.....eeeeeeee......hhhhhhhhhhhhhhhh.....hhhhhhhhh......ee....hhhhhhhhhhh.eeeeee.eeeee.hhhh.......eeeee.......eeeeeeeeeeeeeeee...eeeeeeeeeeeee.............ee.ee.hhhhhhhhh..hhhhhhhhh...hhhhheeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2aeg B   2 CNLYRmEDKDWVSKWAQDAESLINLmPAYQmNPDQmGPIVRNTADGKKQLVHARWGLPSPIFVQKKAAEARADKLKAKGKAFDINELIRmEPDRGVTNVRKLNLPHWTRWFGVEHRCLVPVTSFAEPDPASKQEGGNVPNAWFARDEAKSLmFFAGIHVPQWKSVRKVRDGLTTDDLYGFLTTDPNDLVKPIHEKAmPVLLLTREETEIWmRAPWDEAKHLARPLPNDALIILSREPYGSSIV 244
                                 |  11        21     |  31|    |  41        51        61        71        81        91       101       111       121       131       141       151 |     161       171       181       191      |201       211|      221       231       241   
                                 7-MSE              27-MSE|    |                                                    91-MSE                                                       153-MSE                                      198-MSE       212-MSE                            
                                                         32-MSE|                                                                                                                                                                                                               
                                                              37-MSE                                                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:243
 aligned with A9CLP4_AGRFC | A9CLP4 from UniProtKB/TrEMBL  Length:257

    Alignment length:243
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241   
         A9CLP4_AGRFC     2 CNLYRMEDKDWVSKWAQDAESLINLMPAYQMNPDQMGPIVRNTADGKKQLVHARWGLPSPIFVQKKAAEARADKLKAKGKAFDINELIRMEPDRGVTNVRKLNLPHWTRWFGVEHRCLVPVTSFAEPDPASKQEGGNVPNAWFARDEAKSLMFFAGIHVPQWKSVRKVRDGLTTDDLYGFLTTDPNDLVKPIHEKAMPVLLLTREETEIWMRAPWDEAKHLARPLPNDALIILSREPYGSSIV 244
               SCOP domains d2aegc_ C: Hypothetical protein Atu5096                                                                                                                                                                                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....hhhhhh...ee.......eee....eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhhh....hhhhhhhhh......ee.......hhhhhhhh.eeeeee.eeeee.hhhh.......eeeee.......eeeeeeeeeeeeee......eeeeeeeeeeee.............ee.ee.hhhhhhhhhhhhhhhhhhhh...hhhhheeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2aeg C   2 CNLYRmEDKDWVSKWAQDAESLINLmPAYQmNPDQmGPIVRNTADGKKQLVHARWGLPSPIFVQKKAAEARADKLKAKGKAFDINELIRmEPDRGVTNVRKLNLPHWTRWFGVEHRCLVPVTSFAEPDPASKQEGGNVPNAWFARDEAKSLmFFAGIHVPQWKSVRKVRDGLTTDDLYGFLTTDPNDLVKPIHEKAmPVLLLTREETEIWmRAPWDEAKHLARPLPNDALIILSREPYGSSIV 244
                                 |  11        21     |  31|    |  41        51        61        71        81        91       101       111       121       131       141       151 |     161       171       181       191      |201       211|      221       231       241   
                                 7-MSE              27-MSE|    |                                                    91-MSE                                                       153-MSE                                      198-MSE       212-MSE                            
                                                         32-MSE|                                                                                                                                                                                                               
                                                              37-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2AEG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2AEG)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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