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(-) Description

Title :  CRYSTAL STRUCTURE OF RNA OLIGOMER CONTAINING 4'-THIORIBOSE
 
Authors :  P. Haeberli, I. Berger, P. S. Pallan, M. Egli
Date :  16 Jun 05  (Deposition) - 16 Aug 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  A-Rna; Double Helix; Ribonucleic Acid; 4'-Thio Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Haeberli, I. Berger, P. S. Pallan, M. Egli
Syntheses Of 4'-Thioribonucleosides And Thermodynamic Stability And Crystal Structure Of Rna Oligomers With Incorporated 4'-Thiocytosine
Nucleic Acids Res. V. 33 3965 2005
PubMed-ID: 16027443  |  Reference-DOI: 10.1093/NAR/GKI704
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-R(*CP*CP*(S4C)P*CP*GP*GP*GP*G)-3'
    ChainsA, B
    EngineeredYES
    Other DetailsSYNTHESIS ROUTE SEE PUBLICATION
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1S4C2Mod. Nucleotide4'-THIO-4'-DEOXY-CYTOSINE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:RNA  Length:8
                                       
                  2a0p A  1 CCcCGGGG  8
                              |     
                              |     
                              3-S4C 

Chain B from PDB  Type:RNA  Length:8
                                       
                  2a0p B  9 CCcCGGGG 16
                              |     
                             11-S4C 

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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