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(-) Description

Title :  PEPTOID ANALOGUE OF MACULATIN G15 - PEPTOID TRANS-NLEU AT POSITION 13
 
Authors :  L. E. Uggerhoej, P. Guentert, R. Wimmer
Date :  29 Mar 14  (Deposition) - 23 Jul 14  (Release) - 03 Dec 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Peptoid, N-Substituted Glycine, Maculatin, Antimicrobial Peptide, Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. E. Uggerhj, J. K. Munk, P. R. Hansen, P. Guntert, R. Wimmer
Structural Features Of Peptoid-Peptide Hybrids In Lipid-Water Interfaces.
Febs Lett. V. 588 3291 2014
PubMed-ID: 25063337  |  Reference-DOI: 10.1016/J.FEBSLET.2014.07.016

(-) Compounds

Molecule 1 - MACULATIN G15
    Chains: A
    Engineered: YES
    Organism Common: GREEN-EYED TREE FROG
    Organism Scientific: LITORIA GENIMACULATA
    Organism Taxid: 95132
    Other Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED.
    Synonym: MACULATIN-1.1.1
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

NMR Structure (2, 2)
No.NameCountTypeFull Name
1I4G1Mod. Amino AcidN-(2-METHYLPROPYL)GLYCINE
2NH21Mod. Amino AcidAMINO GROUP
NMR Structure * (2, 2)
No.NameCountTypeFull Name
1I4G1Mod. Amino AcidN-(2-METHYLPROPYL)GLYCINE
2NH21Mod. Amino AcidAMINO GROUP

(-) Sites  (0, 0)

(no "Site" information available for 2MN9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MN9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MN9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MN9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2MN9)

(-) Exons   (0, 0)

(no "Exon" information available for 2MN9)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:22
 aligned with MCU11_LITGE | P82066 from UniProtKB/Swiss-Prot  Length:21

    Alignment length:22
                                               21     
                                    10        20| 
           MCU11_LITGE    1 GLFGVLAKVAAHVVPAIAEHF-  -
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                  2mn9 A  1 GLFGVLAKVAAHgVGAIAEHFx 22
                                    10  |     20 |
                                       13-I4G   22-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MN9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MN9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MN9)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (MCU11_LITGE | P82066)
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MCU11_LITGE | P82066: 2mmj 2mn8

(-) Related Entries Specified in the PDB File

2mmj MACULATIN G15 WITH PEPTOID RESIDUE AT POSITION 11 RELATED ID: 19856 RELATED DB: BMRB MACULATIN G15 WITH PEPTOID RESIDUE AT POSITION 11 RELATED ID: 19883 RELATED DB: BMRB
2mn8 IDENTICAL PEPTIDE SEQUENCE, BUT WITH CIS-PEPTIDE BOND AT THE PEPTOID RESIDUE RELATED ID: 19882 RELATED DB: BMRB IDENTICAL PEPTIDE SEQUENCE, BUT WITH CIS-PEPTIDE BOND AT THE PEPTOID RESIDUE