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(-) Description

Title :  SOLUTION STRUCTURE OF A BETA-HAIRPIN PEPTIDOMIMETIC ANTIBIOTIC THAT TARGETS LPTD IN PSEUDOMONAS SP.
 
Authors :  K. Moehle, J. Schmidt, J. Robinson
Date :  24 Apr 13  (Deposition) - 11 Sep 13  (Release) - 11 Sep 13  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Peptidomimetics, Beta-Hairpin, Antibiotic (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Schmidt, K. Patora-Komisarska, K. Moehle, D. Obrecht, J. A. Robinson
Structural Studies Of Beta-Hairpin Peptidomimetic Antibiotics That Target Lptd In Pseudomonas Sp.
Bioorg. Med. Chem. V. 21 5806 2013
PubMed-ID: 23932450  |  Reference-DOI: 10.1016/J.BMC.2013.07.013

(-) Compounds

Molecule 1 - BETA-HAIRPIN PEPTIDOMIMETIC ANTIBIOTIC TWL(DAB)(ORN)(DLY) RW(ORN)(DAB)AK(DPR)P
    Chains: A
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

NMR Structure (4, 6)
No.NameCountTypeFull Name
1DAB2Mod. Amino Acid2,4-DIAMINOBUTYRIC ACID
2DLY1Mod. Amino AcidD-LYSINE
3DPR1Mod. Amino AcidD-PROLINE
4ORN2Mod. Amino AcidL-ORNITHINE
NMR Structure * (4, 6)
No.NameCountTypeFull Name
1DAB2Mod. Amino Acid2,4-DIAMINOBUTYRIC ACID
2DLY1Mod. Amino AcidD-LYSINE
3DPR1Mod. Amino AcidD-PROLINE
4ORN2Mod. Amino AcidL-ORNITHINE

(-) Sites  (0, 0)

(no "Site" information available for 2M7I)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2M7I)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2M7I)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2M7I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2M7I)

(-) Exons   (0, 0)

(no "Exon" information available for 2M7I)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:14
                                             
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author .eeee..eeee... Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                  2m7i A  1 TWLaaxRWaaAKxP 14
                               |||  10  | 
                               |||  ||  | 
                               4-DAB||  | 
                                5-ORN|  | 
                                 6-DLY  | 
                                    9-ORN 
                                    10-DAB
                                       13-DPR
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2M7I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2M7I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2M7I)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

2m7j