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(-) Description

Title :  DI-O-GALNAC GLYCOSYLATED MUCIN SEQUENCE BASED ON MUC2 MUCIN GLYCOPROTEIN TANDEM REPEAT
 
Authors :  A. Borgert, J. Heimburg-Molinaro, Y. Lasanajak, T. Ju, M. Liu, P. Thomp G. Ragupathi, G. Barany, R. Cummings, D. Smith, D. Live
Date :  18 Aug 11  (Deposition) - 04 Apr 12  (Release) - 27 Jun 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (29x)
NMR Structure *:  A  (1x)
Keywords :  Glycosylation, Tn Antigen, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Borgert, J. Heimburg-Molinaro, X. Song, Y. Lasanajak, T. Ju, M. Liu P. Thompson, G. Ragupathi, G. Barany, D. F. Smith, R. D. Cummings, D. Live
Deciphering Structural Elements Of Mucin Glycoprotein Recognition.
Acs Chem. Biol. V. 7 1031 2012
PubMed-ID: 22444368  |  Reference-DOI: 10.1021/CB300076S

(-) Compounds

Molecule 1 - MUC2 MUCIN DOMAIN PEPTIDE
    Chains: A
    Engineered: YES
    Other Details: SYNTHESIZED VIA SOLID PHASE PEPTIDE SYNTHESIS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (29x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

NMR Structure (3, 4)
No.NameCountTypeFull Name
1A2G2Ligand/IonN-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2ACE1Mod. Amino AcidACETYL GROUP
3NH21Mod. Amino AcidAMINO GROUP
NMR Structure * (3, 4)
No.NameCountTypeFull Name
1A2G2Ligand/IonN-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2ACE1Mod. Amino AcidACETYL GROUP
3NH21Mod. Amino AcidAMINO GROUP

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:3 , THR A:4 , THR A:5BINDING SITE FOR RESIDUE A2G A 10
2AC2SOFTWARETHR A:5 , LEU A:7BINDING SITE FOR RESIDUE A2G A 11

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LHY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LHY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LHY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2LHY)

(-) Exons   (0, 0)

(no "Exon" information available for 2LHY)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:9
                                       
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                   2lhy A 1 xPTTTPLKx 9
                            |       |
                            |       9-NH2
                            1-ACE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LHY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LHY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LHY)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  2lhy
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

2lhv 2lhw 2lhx 2lhz 2li0 2li1 2li2