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(-) Description

Title :  CRYSTAL STRUCTURES OF OLIGODEOXYRIBONUCLEOTIDES CONTAINING 6'-ALPHA-METHYL AND 6'-ALPHA-HYDROXY CARBOCYCLIC THYMIDINES
 
Authors :  S. Portmann, K. -H. Altmann, N. Reynes, M. Egli
Date :  10 Oct 96  (Deposition) - 12 Nov 96  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  B-Dna, Double Helix, Modified, Carbocyclus, Antisense (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Portmann, K. -H. Altmann, N. Reynes, M. Egli
Crystal Structures Of Oligodeoxyribonucleotides Containing 6'-Alpha-Methyl And 6'-Alpha-Hydroxy Carbocyclic Thymidines
J. Am. Chem. Soc. V. 119 2396 1997
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*GP*AP*AP*(T32)P*(T32) P*CP*GP*CP*G)-3')
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1T324Mod. Nucleotide6'-ALPHA-METHYL CARBOCYCLIC THYMIDINE 5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 290D)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 290D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 290D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 290D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 290D)

(-) Exons   (0, 0)

(no "Exon" information available for 290D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:12
                                           
                  290d A  1 CGCGAAttCGCG 12
                                  ||10  
                                  7-T32 
                                   8-T32


Chain B from PDB  Type:DNA  Length:12
                                           
                  290d B 13 CGCGAAttCGCG 24
                                  ||22  
                                 19-T32 
                                  20-T32
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 290D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 290D)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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  290d
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