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(-) Description

Title :  THE STRUCTURE OF D(GGCCAATTGG) COMPLEXED WITH NETROPSIN
 
Authors :  K. Van Hecke, P. C. Nam, M. T. Nguyen, L. Van Meervelt
Date :  31 Mar 05  (Deposition) - 14 Mar 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  B-Dna Double Helix, Base Triplets, Minor Groove Binder, Drug, Netropsin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Van Hecke, P. C. Nam, M. T. Nguyen, L. Van Meervelt
Netropsin Interactions In The Minor Groove Of D(Ggccaattgg) Studied By A Combination Of Resolution Enhancement And Ab Initio Calculations.
Febs J. V. 272 3531 2005
PubMed-ID: 16008554  |  Reference-DOI: 10.1111/J.1742-4658.2005.04773.X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3')
    Chains: A, B
    Engineered: YES
    Other Details: THE OLIGONUCLEOTIDE WAS PURCHASED FROM OSWEL DNA SERVICE (UNIVERSITY OF SOUTHAMPTON, UK)
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1NT1Ligand/IonNETROPSIN

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDA A:5 , DA A:6 , DT A:7 , DT A:8 , DG A:9 , DA B:25 , DA B:26 , DT B:27 , DT B:28 , DG B:29 , DG B:30 , HOH B:117 , HOH B:140 , HOH B:157 , HOH B:160BINDING SITE FOR RESIDUE NT B 31

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Z8V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1Z8V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Z8V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Z8V)

(-) Exons   (0, 0)

(no "Exon" information available for 1Z8V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:10
                                         
                  1z8v A  1 GGCCAATTGG 10
                                    10


Chain B from PDB  Type:DNA  Length:10
                                         
                  1z8v B 21 GGCCAATTGG 30
                                    30
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1Z8V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1Z8V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1Z8V)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  1z8v
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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