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(-) Description

Title :  NMR CONFORMATIONAL ANALYSIS OF LHRH AND ITS ANALOGUES
 
Authors :  G. A. Spyroulias, A. Zompra, V. Magafa, P. Cordopatis
Date :  23 Feb 05  (Deposition) - 21 Feb 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (21x)
Keywords :  U-Shape Like Peptide, Antitumor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. A. Spyroulias, A. Zompra, V. Magafa, P. Cordopatis
Nmr Conformational Analysis Of Lhrh And Its Analogues
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LEUPROLIDE
    Chains: A
    Engineered: YES
    Other Details: THIS IS A SYNTHETIC PEPTIDE. THIS SEQUENCE DOES NOT OCCUR NATURALLY IN HUMANS. IT IS A MODIFIED SEQUENCE OF LHRH.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (21x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

NMR Structure (3, 3)
No.NameCountTypeFull Name
1DLE1Mod. Amino AcidD-LEUCINE
2NEH1Ligand/IonETHANAMINE
3PCA1Mod. Amino AcidPYROGLUTAMIC ACID

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:3 , SER A:4 , ARG A:8 , PRO A:9BINDING SITE FOR RESIDUE NEH A 10

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YY2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YY2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YY2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YY2)

(-) Exons   (0, 0)

(no "Exon" information available for 1YY2)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:9
                                       
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                   1yy2 A 1 xHWSYxLRP 9
                            |    |   
                            |    |   
                            1-PCA|   
                                 6-DLE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1YY2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1YY2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1YY2)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  1yy2
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 Related Entries

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1yy1