1YN2 - JenaLib

Title :   SOLUTION STRUCTURE OF THE NEUROSPORA VS RIBOZYME STEM-LOOP V IN THE PRESENCE OF MGCL2 WITH MODELING OF BOUND MANGANESE IONS

Authors :   D. O. Campbell, P. Legault

Date :   23 Jan 05 (Deposition) - 24 Jan 06 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (11x)

Keywords :   U-Turn; Hairpin; Magnesium Ions; Manganese Ions; Paramagnetic, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. O. Campbell, P. Bouchard, G. Desjardins, P. Legault
Nmr Structure Of Varkud Satellite Ribozyme Stem-Loop V In The Presence Of Magnesium Ions And Localization Of Metal-Binding Sites
Biochemistry V. 45 10591 2006
PubMed-ID: 16939211 | Reference-DOI: 10.1021/BI0607150
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

NMR Structure (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:711 , HOH A:712 , HOH A:713 , HOH A:714 , HOH A:715 , HOH A:716	BINDING SITE FOR RESIDUE MN A 707
2	AC2	SOFTWARE	HOH A:717 , HOH A:718 , HOH A:719 , HOH A:720 , HOH A:721 , HOH A:722	BINDING SITE FOR RESIDUE MN A 708
3	AC3	SOFTWARE	HOH A:723 , HOH A:724 , HOH A:725 , HOH A:726 , HOH A:727 , HOH A:728	BINDING SITE FOR RESIDUE MN A 709
4	AC4	SOFTWARE	HOH A:729 , HOH A:730 , HOH A:731 , HOH A:732 , HOH A:733 , HOH A:734	BINDING SITE FOR RESIDUE MN A 710

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:RNA  Length:17
                                                 
                 1yn2 A 690 GCGAGUUGACUACUCGC 706
                                   699

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Classification and Annotation

SCOP Domains (0, 0)

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Pfam Domains (0, 0)

Gene Ontology (0, 0)

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