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(-) Description

Title :  MISPAIR ALIGNED N3T-BUTYL-N3T INTERSTRAND CROSSLINK
 
Authors :  M. W. Da Silva, R. G. Bierbryer, C. J. Wilds, A. M. Noronha, O. M. Colvin, P. S. Miller, M. P. Gamcsik
Date :  02 Sep 04  (Deposition) - 16 Aug 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
Keywords :  Interstrand Cross-Link, Double Helix, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. W. Da Silva, R. G. Bierbryer, C. J. Wilds, A. M. Noronha, O. M. Colvin, P. S. Miller, M. P. Gamcsik
Intrastrand Base-Stacking Buttresses Widening Of Major Groove In Interstrand Cross-Linked B-Dna.
Bioorg. Med. Chem. V. 13 4580 2005
PubMed-ID: 15953553  |  Reference-DOI: 10.1016/J.BMC.2005.03.032
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*AP*AP*AP*(TTM)P*TP*TP*TP*CP*G)-3'
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

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NMR Structure : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1TTM2Mod. NucleotideN3-ETHYL-THYMIDINE-5'-MONOPHOSPHATE

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:DNA  Length:11
                                          
                  1xci A  1 CGAAAtTTTCG 11
                                 |  10 
                                 6-TTM 


Chain B from PDB  Type:DNA  Length:11
                                          
                  1xci B  1 CGAAAtTTTCG 11
                                 |  10 
                                 6-TTM
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

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NMR Structure(hide GO term definitions)
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