1X26 - JenaLib

Title :   SOLUTION STRUCTURE OF THE AA-MISMATCH DNA COMPLEXED WITH NAPHTHYRIDINE-AZAQUINOLONE

Authors :   K. Nakatani, S. Hagihara, Y. Goto, A. Kobori, M. Hagihara, G. Hayashi, M. Kyo, M. Nomura, M. Mishima, C. Kojima

Date :   20 Apr 05 (Deposition) - 04 Apr 06 (Release) - 27 May 08 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B  (30x)

Keywords :   Dna, Aa Mismatch, Drug (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Nakatani, S. Hagihara, Y. Goto, A. Kobori, M. Hagihara, G. Hayashi, M. Kyo, M. Nomura, M. Mishima, C. Kojima
Small-Molecule Ligand Induces Nucleotide Flipping In (Cag)N Trinucleotide Repeats
Nat. Chem. Biol. V. 1 39 2005
PubMed-ID: 16407992 | Reference-DOI: 10.1038/NCHEMBIO708
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

NMR Structure (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	DA A:4 , DC A:5 , DA A:6 , NAZ A:25 , DC B:16 , DA B:17 , DG B:18	BINDING SITE FOR RESIDUE NAZ B 24
2	AC2	SOFTWARE	DC A:5 , DA A:6 , DG A:7 , DA A:8 , DT B:15 , DC B:16 , DA B:17 , NAZ B:24	BINDING SITE FOR RESIDUE NAZ A 25

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA  Length:11
                                          
                  1x26 A  1 CTAACAGAATG 11
                                    10

Chain B from PDB  Type:DNA  Length:11
                                          
                  1x26 B 12 CATTCAGTTAG 22
                                    21

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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