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(-) Description

Title :  DESIGN OF NEW MIMOCHROMES WITH UNIQUE TOPOLOGY
 
Authors :  A. Lombardi, F. Nastri, D. Marasco, O. Maglio, G. De Sanctis, F. Siniba R. Santucci, M. Coletta, V. Pavone
Date :  05 Jul 04  (Deposition) - 20 Jul 04  (Release) - 31 Aug 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
NMR Structure *:  A,B  (1x)
Keywords :  Alpha-Helix, Design, Miniaturized Metalloproteins, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Lombardi, F. Nastri, D. Marasco, O. Maglio, G. De Sanctis, F. Sinibaldi, R. Santucci, M. Coletta, V. Pavone
Design Of A New Mimochrome With Unique Topology.
Chemistry V. 9 5643 2003
PubMed-ID: 14639648

(-) Compounds

Molecule 1 - GLU-SER-GLN-LEU-HIS-SER-ASN-LYS-ARG
    Chains: A, B
    Engineered: YES
    Other Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure : AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

NMR Structure (3, 5)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP
2DEU1Ligand/IonCO(III)-(DEUTEROPORPHYRIN IX)
3NH22Mod. Amino AcidAMINO GROUP
NMR Structure * (3, 5)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP
2DEU1Ligand/IonCO(III)-(DEUTEROPORPHYRIN IX)
3NH22Mod. Amino AcidAMINO GROUP

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:1 , HIS A:5 , ASN A:7 , LYS A:8 , ARG A:9 , GLU B:1 , HIS B:5 , LYS B:8BINDING SITE FOR RESIDUE DEU B 19

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VL3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VL3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VL3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VL3)

(-) Exons   (0, 0)

(no "Exon" information available for 1VL3)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:11
                                          
               SCOP domains d1vl3a_ A:  SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author .hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                  1vl3 A  0 xESQLHSNKRx 10
                            |        9|
                            |        10-NH2
                            0-ACE      


Chain B from PDB  Type:PROTEIN  Length:11
                                          
               SCOP domains d1vl3b_ B:  SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author .hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                  1vl3 B  0 xESQLHSNKRx 10
                            |        9|
                            |        10-NH2
                            0-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: Designed proteins (167)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1VL3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1VL3)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 1VL3)

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  1vl3
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 Related Entries

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