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(-) Description

Title :  NMR STRUCTURE OF A DNA DUPLEX WITH TWO INA NUCLEOTIDES INSERTED OPPOSITE EACH OTHER, DCTCAACXCAAGCT:DAGCTTGXGTTGAG
 
Authors :  C. B. Nielsen, M. Petersen, E. B. Pedersen, P. E. Hansen, U. B. Christensen
Date :  31 Jan 04  (Deposition) - 25 May 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
Keywords :  Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. B. Nielsen, M. Petersen, E. B. Pedersen, P. E. Hansen, U. B. Christensen
Nmr Structure Determination Of A Modified Dna Oligonucleotide Containing A New Intercalating Nucleic Acid.
Bioconjug. Chem. V. 15 260 2004
PubMed-ID: 15025521  |  Reference-DOI: 10.1021/BC0341932
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*TP*CP*AP*AP*CP*(2DM)P*CP*AP*AP*GP*CP*T)- 3'
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 5'-D(*AP*GP*CP*TP*TP*GP*(2DM)P*GP*TP*TP*GP*AP*G)- 3'
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
12DM2Mod. Nucleotide2-HYDROXY-3-(PYREN-1-YLMETHOXY)PROPYL DIHYDROGENPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 1S88)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1S88)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1S88)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1S88)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1S88)

(-) Exons   (0, 0)

(no "Exon" information available for 1S88)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:13
                                            
                  1s88 A  1 CTCAACxCAAGCT 13
                                  | 10   
                                  7-2DM  


Chain B from PDB  Type:DNA  Length:13
                                            
                  1s88 B 14 AGCTTGxGTTGAG 26
                                  | 23   
                                 20-2DM
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1S88)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1S88)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1S88)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 1S88)

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  1s88
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 Related Entries

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