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(-) Description

Title :  SOLUTION STRUCTURES OF HIGH AFFINITY MINIPROTEIN LIGANDS TO STREPTAVIDIN
 
Authors :  J. Luo, M. Mukherjee, X. Fan, H. Yang, D. Liu, R. Khan, M. White, R. O. Fox
Date :  28 Oct 03  (Deposition) - 15 Feb 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (30x)
Keywords :  Nmr, Miniprotein, Streptavidin, High-Affinity, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Luo, M. Mukherjee, X. Fan, H. Yang, D. Liu, R. Khan, M. White, R. O. Fox
Structure-Based Design Of High Affinity Miniprotein Ligands
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MP1
    Chains: A
    Engineered: YES
    Other Details: THIS SEQUENCE WAS IDENTIFIED TO BE A HIGH AFFINITY STREPTAVIDIN BINDING LIGAND BY PHAGE DISPLAY
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (30x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1R8T)

(-) Sites  (0, 0)

(no "Site" information available for 1R8T)

(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:2 -A:7
2A:3 -A:13

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1R8T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:15
                                              
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ......hhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                  1r8t A  1 RCCHPQCGAAYSCRK 15
                                    10
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1R8T)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  1r8t
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 Related Entries

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(-) Related Entries Specified in the PDB File

1hy2 MINIPROTEIN MP1 COMPLEX WITH STREPTAVIDIN
1not 1.2 ANGSTROM STRUCTURE OF GI CONOTOXIN