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(-) Description

Title :  NMR STRUCTURE OF 5'-R(GGAUGCCUCCCGAGUGCAUCC): AN RNA HAIRPIN DERIVED FROM THE MOUSE 5'ETS THAT BINDS NUCLEOLIN RBD12.
 
Authors :  L. D. Finger, L. Trantirek, C. Johansson, J. Feigon
Date :  01 Sep 03  (Deposition) - 25 Nov 03  (Release) - 01 Feb 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (17x)
NMR Structure *:  A  (1x)
Keywords :  Tetraloop, Uncg, Uucg, Ynmg, Bulged Nucleotide, Hairpin, A-Form Helix, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. D. Finger, L. Trantirek, C. Johansson, J. Feigon
Solution Strucutres Of Stem-Loop Rnas That Bind To The Two N-Terminal Rna Binding Domains Of Nucleolin
Nucleic Acids Res. V. 31 6461 2003
PubMed-ID: 14602904  |  Reference-DOI: 10.1093/NAR/GKG866

(-) Compounds

Molecule 1 - 18S RIBOSOMAL RNA, 5'ETS
    Chains: A
    Engineered: YES
    Fragment: B2NRE
    Other Details: B2: A RNA HAIRPIN DERIVED FROM NTS 394-410 OF THE MOUSE 5' ETS.
    Other Details - Source: THE RNA WAS CHEMICALLY SYNTHESIZED IN VITRO USING T7 RNA POLYMERASE AND SYNTHETIC DNA TEMPLATES. THE SEQUENCE OF THE RNA IS NATURALLY FOUND IN MUS MUSCULUS (MOUSE).
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (17x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

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(-) Sequences/Alignments

NMR Structure
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Chain A from PDB  Type:RNA  Length:21
                                                    
                  1qwa A  1 GGAUGCCUCCCGAGUGCAUCC 21
                                    10        20
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 Related Entries

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(-) Related Entries Specified in the PDB File

1f7f SOLUTION STRUCTURE AND METAL ION BINDING OF THE P4 ELEMENT FROM BACTERIAL RNASE P RNA. STRUCTURE CONTAINS 5' BULGED URIDINE IN THE CONTEXT OF A GC/CG STACK.
1f7y CRYSTAL STRUCTURE OF THE CUUCGG TETRALOOP.
1jp0 STRUCTURE OF THE UGAGAU HEXALOOP THAT BRACES BACILLUS RNASE P FOR ACTION. STRUCUTRE CONTAINS A 5' BULGED URIDINE IN THE CONTEXT OF A GC/GC STACK.
1qwb NMR STRUCUTRE OF 5'-R(GGACACGAAAUCCCGAAGUAGUGUCC)-3' : AN RNA HAIPRIN CONTAINING THE IN VITRO SELECTED CONSENSUS SEQUENCE FOR NUCLEOLIN RBD12.