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(-) Description

Title :  1.5 A RESOLUTION STRUCTURE OF A SYNTHETIC DNA HAIRPIN WITH A STILBENEDIETHER LINKER
 
Authors :  M. Egli, V. Tereshko, G. Murshudov, R. Sanishvili, X. Liu, F. D. Lewis
Date :  25 Jun 03  (Deposition) - 14 Oct 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Egli, V. Tereshko, G. N. Mushudov, R. Sanishvili, X. Liu, F. D. Lewis
Face-To-Face And Edge-To-Face Pi-Pi Interactions In A Synthetic Dna Hairpin With A Stilbenediether Linker
J. Am. Chem. Soc. V. 125 10842 2003
PubMed-ID: 12952463  |  Reference-DOI: 10.1021/JA0355527
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)- 3'
    Chains: A, B
    Engineered: YES
    Other Details: SYNTHETIC CONSTRUCT
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1MG5Ligand/IonMAGNESIUM ION
2S022Mod. NucleotidePHOSPHORIC ACID MONO-[2-(4-{2-[4-(2-HYDROXY-ETHOXY)-CYCLOHEXYLIDENE]-ETHYLIDENE}-CYCLOHEXYLOXY) -ETHYL]ESTER
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2S021Mod. NucleotidePHOSPHORIC ACID MONO-[2-(4-{2-[4-(2-HYDROXY-ETHOXY)-CYCLOHEXYLIDENE]-ETHYLIDENE}-CYCLOHEXYLOXY) -ETHYL]ESTER
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2S021Mod. NucleotidePHOSPHORIC ACID MONO-[2-(4-{2-[4-(2-HYDROXY-ETHOXY)-CYCLOHEXYLIDENE]-ETHYLIDENE}-CYCLOHEXYLOXY) -ETHYL]ESTER

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:202 , HOH A:203 , HOH A:204 , HOH A:205 , HOH A:206 , HOH A:207BINDING SITE FOR RESIDUE MG A 201
2AC2SOFTWAREHOH B:209 , HOH B:210 , HOH B:211 , HOH B:212 , HOH B:213 , HOH B:214BINDING SITE FOR RESIDUE MG B 208
3AC3SOFTWAREHOH A:302 , HOH A:303 , HOH A:304 , HOH A:305 , HOH A:306 , HOH A:307BINDING SITE FOR RESIDUE MG A 301
4AC4SOFTWAREHOH A:309 , HOH A:310 , HOH A:311 , HOH A:312 , HOH A:313 , HOH A:314BINDING SITE FOR RESIDUE MG A 308
5AC5SOFTWAREHOH B:316 , HOH B:317 , HOH B:318 , HOH B:319 , HOH B:320 , HOH B:321BINDING SITE FOR RESIDUE MG B 315

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PUY)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1PUY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:13
                                            
                  1puy A  1 GTTTTGxCAAAAC 14
                                  ||11   
                                  7-S02  
                                   9     


Chain B from PDB  Type:DNA  Length:13
                                            
                  1puy B  1 GTTTTGxCAAAAC 14
                                  ||11   
                                  7-S02  
                                   9
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1PUY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1PUY)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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(-) Related Entries Specified in the PDB File

1cs7 3.2 A RESOLUTION STRUCTURE WITH FOUR MOLECULES IN ASYMMETRIC UNIT