1PJO | UH0006 - JenaLib

Title :   CRYSTAL STRUCTURE OF AN RNA/DNA HYBRID OF HIV-1 PPT

Authors :   M. L. Kopka, L. Lavelle, G. W. Han, H. -L. Ng, R. E. Dickerson

Date :   03 Jun 03 (Deposition) - 09 Dec 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.10

Chains :   Asym./Biol. Unit : A,B

Keywords :   Rna/Dna Hybrid; Polypurine Tract Of Hiv-1; Moleuclar Replacement; Sugar Conformation, Dna/Rna Complex, Dna-Rna Hybrid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. L. Kopka, L. Lavelle, G. W. Han, H. -L. Ng, R. E. Dickerson
An Unusual Sugar Conformation In The Structure Of An Rna/Dna Decamer Of The Polypurine Tract May Affect Recognition By Rnase H
J. Mol. Biol. V. 334 653 2003
PubMed-ID: 14636594 | Reference-DOI: 10.1016/J.JMB.2003.09.057
(for further references see the PDB file header)

Compounds

*Molecule 1 - 5'-R(CPAPAPAPGPAPAPAPAPG)-3'*
	Chains	:	A
	Engineered	:	YES
	Fragment	:	POLYPURINE TRACT OF HIV-1
	Synthetic	:	YES

*Molecule 2 - 5'-D(CPTPTPTPTPCPTPTPTPG)-3'*
	Chains	:	B
	Engineered	:	YES
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 6)

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	A A:9 , HOH A:132 , HOH A:133 , HOH A:134 , DT B:18 , HOH B:135	BINDING SITE FOR RESIDUE MG A 31
2	AC2	SOFTWARE	G A:5 , HOH A:125 , HOH A:136 , HOH A:137 , HOH A:138 , HOH A:139 , HOH A:140	BINDING SITE FOR RESIDUE MG A 32
3	AC3	SOFTWARE	A A:9 , HOH A:141 , HOH A:142 , HOH A:143 , HOH A:144 , HOH A:145	BINDING SITE FOR RESIDUE MG A 33
4	AC4	SOFTWARE	A A:9 , G A:10 , HOH A:147 , HOH A:148 , HOH A:149 , DT B:18 , DG B:20 , HOH B:146	BINDING SITE FOR RESIDUE MG B 34
5	AC5	SOFTWARE	HOH A:150 , HOH A:151 , HOH A:152 , HOH A:154 , HOH B:153 , HOH B:155	BINDING SITE FOR RESIDUE MG A 35
6	AC6	SOFTWARE	A A:7 , HOH A:156 , HOH A:157 , HOH A:158 , HOH A:159 , HOH A:160	BINDING SITE FOR RESIDUE MG A 36

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:RNA  Length:10
                                         
                  1pjo A  1 CAAAGAAAAG 10
                                    10

Chain B from PDB  Type:DNA  Length:10
                                         
                  1pjo B 11 CTTTTCTTTG 20
                                    20

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Classification and Annotation

SCOP Domains (0, 0)

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Pfam Domains (0, 0)

Gene Ontology (0, 0)

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