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(-) Description

Title :  STRUCTURAL CHARACTERISATION OF THE HOLLIDAY JUNCTION FORMED BY THE SEQUENCE CCGGTACCGG AT 1.8 A
 
Authors :  C. J. Cardin, B. C. Gale, J. H. Thorpe, S. C. M. Teixeira, Y. Gan, M. I. A. A. Moraes, A. L. Brogden
Date :  04 Feb 03  (Deposition) - 25 Feb 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Holliday Junction, Calcium Ion, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. J. Cardin, B. C. Gale, J. H. Thorpe, S. C. M. Teixeira, Y. Gan, M. I. A. A. Moraes, A. L. Brogden
Structural Analysis Of Two Holliday Junctions Formed By The Sequences Tcggtaccga And Ccggtaccgg
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(CPCPGPGPTPAPCPCPGPG)-3'
    Chains: A, B
    Engineered: YES
    Other Details: CHEMICALLY SYNTHESIZED
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:115 , HOH A:116 , HOH A:143 , HOH A:159 , HOH B:142BINDING SITE FOR RESIDUE CA A 101
2AC2SOFTWAREHOH B:103 , HOH B:106 , HOH B:107 , HOH B:131 , HOH B:132 , HOH B:141 , HOH B:185BINDING SITE FOR RESIDUE CA B 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NVN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NVN)

 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:10
                                         
                  1nvn A  1 CCGGTACCGG 10
                                    10


Chain B from PDB  Type:DNA  Length:10
                                         
                  1nvn B  1 CCGGTACCGG 10
                                    10
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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  1nvn
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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