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(-) Description

Title :  HIV-1 DIS(MAL) DUPLEX ZN-SOAKED
 
Authors :  E. Ennifar, P. Walter, P. Dumas
Date :  07 Jan 03  (Deposition) - 13 May 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hiv-1, Rna, Zinc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Ennifar, P. Walter, P. Dumas
A Crystallographic Study Of The Binding Of 13 Metal Ions To Two Related Rna Duplexes.
Nucleic Acids Res. V. 31 2671 2003
PubMed-ID: 12736317  |  Reference-DOI: 10.1093/NAR/GKG350
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HIV-1 DIS(MAL) GENOMIC RNA
    Chains: A, B
    Engineered: YES
    Other Details: HIV-1 5' UNTRANSLATED REGION
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1ZN6Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREA B:8 , G B:9 , HOH B:353 , HOH B:354 , HOH B:355 , HOH B:378BINDING SITE FOR RESIDUE ZN B 53
2AC2SOFTWAREA A:8 , G A:9 , HOH A:137 , HOH A:156 , HOH A:241 , HOH A:256BINDING SITE FOR RESIDUE ZN A 54
3AC3SOFTWAREA B:22 , HOH B:174BINDING SITE FOR RESIDUE ZN B 55
4AC4SOFTWAREHOH A:168 , HOH A:319 , HOH A:386 , HOH A:387 , HOH A:388BINDING SITE FOR RESIDUE ZN A 50
5AC5SOFTWAREHOH A:389 , HOH B:330 , HOH B:376 , HOH B:384 , HOH B:385 , HOH B:390BINDING SITE FOR RESIDUE ZN B 51
6AC6SOFTWAREHOH B:380 , HOH B:381 , HOH B:391 , HOH B:392 , HOH B:393BINDING SITE FOR RESIDUE ZN B 52

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NLC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NLC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NLC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NLC)

(-) Exons   (0, 0)

(no "Exon" information available for 1NLC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:23
                                                      
                  1nlc A  1 CUUGCUGAGGUGCACACAGCAAG 23
                                    10        20   


Chain B from PDB  Type:RNA  Length:23
                                                      
                  1nlc B  1 CUUGCUGAGGUGCACACAGCAAG 23
                                    10        20
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1NLC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1NLC)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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 Related Entries

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(-) Related Entries Specified in the PDB File

462d HIV-1 DIS DUPLEX(MAL) MG-SOAKED