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(-) Description

Title :  STRUCTURE AND DYNAMICS OF THIOGUANINE-MODIFIED DUPLEX DNA
 
Authors :  L. Somerville, E. Y. Krynetski, N. F. Krynetskaia, R. D. Beger, W. Zhang, C. A. Marhefka, W. E. Evans, R. W. Kriwacki
Date :  16 Oct 02  (Deposition) - 23 Oct 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
Keywords :  Thioguanine, 6-Mercapto Purine, Anti-Cancer Therapy, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Somerville, E. Y. Krynetski, N. F. Krynetskaia, R. D. Beger, W. Zhang, C. A. Marhefka, W. E. Evans, R. W. Kriwacki
Structure And Dynamics Of Thioguanine-Modified Duplex Dna
J. Biol. Chem. V. 278 1005 2003
PubMed-ID: 12401802  |  Reference-DOI: 10.1074/JBC.M204243200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*GP*CP*TP*AP*AP*GP*(S6G)P*AP*AP*AP*GP*CP*C)- 3'
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 5'-D(*GP*GP*CP*TP*TP*TP*CP*CP*TP*TP*AP*GP*C)-3'
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1S6G1Mod. Nucleotide6-THIO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 1N17)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1N17)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1N17)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1N17)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1N17)

(-) Exons   (0, 0)

(no "Exon" information available for 1N17)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:13
                                            
                  1n17 A  1 GCTAAGgAAAGCC 13
                                  | 10   
                                  7-S6G  


Chain B from PDB  Type:DNA  Length:13
                                            
                  1n17 B 14 GGCTTTCCTTAGC 26
                                    23
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1N17)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1N17)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1N17)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  1n17
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 Related Entries

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(-) Related Entries Specified in the PDB File

1n14 1N14 IS UNMODIFIED GC DUPLEX DNA