1MLX | AD0028 - JenaLib

Title :   CRYSTAL STRUCTURE ANALYSIS OF A 2'-O-[2-(METHYLTHIO)-ETHYL]-MODIFIED OLIGODEOXYNUCLEOTIDE DUPLEX

Authors :   T. P. Prakash, M. Manoharan, A. M. Kawasaki, A. S. Fraser, E. A. Lesnik, N. Sioufi, J. M. Leeds, M. Teplova, M. Egli

Date :   31 Aug 02 (Deposition) - 04 Dec 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.25

Chains :   Asym./Biol. Unit : A,B

Keywords :   Dna, Double Helix, A-Form, Antisense Modification, Nucleic Acid Analogue, Rna Affinity, Nuclease Resistance, Protein Binding Affinity, High Resolution Structure, Hydration (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. P. Prakash, M. Manoharan, A. M. Kawasaki, A. S. Fraser, E. A. Lesnik, N. Sioufi, J. M. Leeds, M. Teplova, M. Egli
2'-O-[2-(Methylthio)Ethyl]-Modified Oligonucleotide: An Analogue Of 2'-O-[2-(Methoxy)-Ethyl]-Modified Oligonucleotide With Improved Protein Binding Properties And High Binding Affinity To Target Rna
Biochemistry V. 41 11642 2002
PubMed-ID: 12269806 | Reference-DOI: 10.1021/BI020264T
(for further references see the PDB file header)

Compounds

*Molecule 1 - 5'-D(GPCPGPTPAPSMTPAPCPGPC)-3'*
	Chains	:	A, B
	Engineered	:	YES
	Other Details	:	SELF-COMPLEMENTARY DNA DECAMER WITH A 2'-O- [2-(METHYLTHIO)ETHYL]-MODIFIED THYMINE (SMT) AT POSITION 6
	Other Details - Source	:	SOLID PHASE OLIGONUCLEOTIDE SYNTHESIS
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (0, 0)

SS Bonds (0, 0)

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Chain A from PDB  Type:DNA/RNA  Length:10
                                          
                 1mlx A   1 GCGTAtACGC  10
                                 |  10
                                 6-SMT

Chain B from PDB  Type:DNA/RNA  Length:10
                                          
                 1mlx B 111 GCGTAtACGC 120
                                 | 120
                               116-SMT

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Classification and Annotation

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