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(-) Description

Title :  NMR REFINED STRUCTURE OF THE 8,9-DIHYDRO-8-(N7-GUANYL)-9-HYDROXY-AFLATOXIN B1 ADDUCT IN A 5'-CPAFBG-3' SEQUENCE
 
Authors :  I. Giri, M. D. Jenkins, N. C. Schnetz-Boutaud, M. P. Stone
Date :  29 Aug 02  (Deposition) - 16 Oct 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
Keywords :  Structure Of The 8, 9-Dihydro-8-(N7-Guanyl)-9-Hydroxy- Aflatoxin B1 Adduct In A 5'-Cpafbg-3' Sequence Context, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  I. Giri, M. D. Jenkins, N. C. Schnetz-Boutaud, M. P. Stone
Structural Refinement Of The 8, 9-Dihydro-8-(N7-Guanyl)-9-Hydroxy-Aflatoxin B(1) Adduct In A 5'-Cp(Afb)G-3' Sequence.
Chem. Res. Toxicol. V. 15 638 2002
PubMed-ID: 12018984  |  Reference-DOI: 10.1021/TX010187N
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*AP*CP*AP*TP*CP*(X)P*AP*TP*CP*T)-3'
    ChainsA
    EngineeredYES
    SyntheticYES
 
Molecule 2 - 5'-D(*AP*GP*AP*TP*CP*GP*AP*TP*GP*T)-3'
    ChainsB
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1X1Mod. Residue2'-DEOXY-N7-(8,9-DIHYDRO-9-HYDROXY-10-DEHYDROXY-AFLATOXIN)GUANOSINE MONOPHOSPHATE

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:10
                                         
                  1mkl A  1 ACATCgATCT 10
                                 |  10
                                 6-X  

Chain B from PDB  Type:DNA  Length:10
                                         
                  1mkl B 11 AGATCGATGT 20
                                    20

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(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

1mk6 SOLUTION STRUCTURE OF THE 8,9-DIHYDRO-8-(N7-GUANYL)-9- HYDROXY-AFLATOXIN B1 ADDUCT MISPAIRED WITH DEOXYADENOSINE