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(-) Description

Title :  ATOMIC RESOLUTION STRUCTURE OF 5BR-9AMINO-DACA WITH D[CGTACG]2
 
Authors :  S. C. M. Teixeira, J. H. Thorpe, A. K. Todd, C. J. Cardin
Date :  15 Jul 02  (Deposition) - 19 Aug 03  (Release) - 08 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Atomic Resolution, Adenine-Thymine Disorder, Topoisomerase Ii Poison, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. C. M. Teixeira, J. H. Thorpe, A. K. Todd, C. J. Cardin
Heavy Going: The Atomic Resolution Structure Of A Topoisomerase Ii Poison Intercalating Into Dna In Multiple Orientations Also Reveals A Multiple Adenine-Thymine Hydrogen Bonding Pattern
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*TP*AP*CP*G)-3'
    Chains: A
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1DAX2Ligand/Ion5-BROMO-N[2-(DIMETHYLAMINO)ETHYL]-9-AMINOACRIDINE-4-CARBOXAMIDE
2SPM1Ligand/IonSPERMINE
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1DAX4Ligand/Ion5-BROMO-N[2-(DIMETHYLAMINO)ETHYL]-9-AMINOACRIDINE-4-CARBOXAMIDE
2SPM2Ligand/IonSPERMINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:1001 , DG A:1006 , HOH A:5022 , HOH A:5024BINDING SITE FOR RESIDUE DAX A 2000
2AC2SOFTWAREDC A:1001 , DG A:1002 , DA A:1004 , DC A:1005 , DG A:1006 , SPM A:4000 , HOH A:5012 , HOH A:5018 , HOH A:5023 , HOH A:5024 , HOH A:5025 , HOH A:5042BINDING SITE FOR RESIDUE DAX A 3000
3AC3SOFTWAREDG A:1002 , DT A:1003 , DAX A:3000 , HOH A:5015 , HOH A:5039BINDING SITE FOR RESIDUE SPM A 4000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1M69)

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(-) Sequences/Alignments

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Chain A from PDB  Type:DNA  Length:6
                                       
                1m69 A 1001 CGTACG 1006
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1M69)

(-) CATH Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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