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(-) Description

Title :  SOLUTION NMR STRUCTURE OF SELF-COMPLEMENTARY DUPLEX 5'-D(AGGCG*CCT)2 CONTAINING A TRIMETHYLENE CROSSLINK AT THE N2 POSITION OF G*. MODEL OF A MALONDIALDEHYDE CROSSLINK
 
Authors :  P. A. Dooley, D. Tsarouhtsis, G. A. Korbel, L. V. Nechev, J. Shearer, I. S. Zegar, C. M. Harris, M. P. Stone, T. M. Harris
Date :  23 Jan 01  (Deposition) - 07 Feb 01  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
Keywords :  Dna Duplex, Interstrand Crosslink (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. A. Dooley, D. Tsarouhtsis, G. A. Korbel, L. V. Nechev, J. Shearer, I. S. Zegar, C. M. Harris, M. P. Stone, T. M. Harris
Structural Studies Of An Oligodeoxynucleotide Containing A Trimethylene Interstrand Cross-Link In A 5'-(Cpg) Motif: Model Of A Malondialdehyde Cross-Link.
J. Am. Chem. Soc. V. 123 1730 2001
PubMed-ID: 11456774  |  Reference-DOI: 10.1021/JA003163W
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*AP*GP*GP*CP*GP*CP*CP*T)-3')
    ChainsA, B
    EngineeredYES
    SyntheticYES

 Structural Features

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NMR Structure 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1TME1Ligand/IonPROPANE

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:5 , DC A:6 , DG B:13 , DC B:14BINDING SITE FOR RESIDUE TME A 9

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(-) Sequences/Alignments

NMR Structure
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Chain A from PDB  Type:DNA  Length:8
                                       
                  1hz2 A  1 AGGCGCCT  8

Chain B from PDB  Type:DNA  Length:8
                                       
                  1hz2 B  9 AGGCGCCT 16

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