1HR2 | UR0012 - JenaLib

Title :   CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON.

Authors :   K. Juneau, E. R. Podell, D. J. Harrington, T. R. Cech

Date :   20 Dec 00 (Deposition) - 12 Apr 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.25

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Rna, P4-P6, C209, Ribozyme, Tetrahymena, Group I Intron, Ribonucleic Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Juneau, E. Podell, D. J. Harrington, T. R. Cech
Structural Basis Of The Enhanced Stability Of A Mutant Ribozyme Domain And A Detailed View Of Rna--Solvent Interactions.
Structure V. 9 221 2001
PubMed-ID: 11286889 | Reference-DOI: 10.1016/S0969-2126(01)00579-2
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 42)

Sites (39, 39)

Asymmetric Unit (39, 39)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	G B:148	BINDING SITE FOR RESIDUE MG B 52
02	AC2	SOFTWARE	G A:245	BINDING SITE FOR RESIDUE MG A 53
03	AC3	SOFTWARE	G B:245 , A B:246	BINDING SITE FOR RESIDUE MG B 54
04	AC4	SOFTWARE	C A:255	BINDING SITE FOR RESIDUE MG A 55
05	AC5	SOFTWARE	C B:213	BINDING SITE FOR RESIDUE MG B 56
06	AC6	SOFTWARE	A A:248 , U A:249 , G A:250	BINDING SITE FOR RESIDUE MG A 57
07	AC7	SOFTWARE	A A:256 , G A:257	BINDING SITE FOR RESIDUE MG A 58
08	AC8	SOFTWARE	G A:160	BINDING SITE FOR RESIDUE MG A 59
09	AC9	SOFTWARE	G A:119 , U A:120 , G A:201 , U A:202	BINDING SITE FOR RESIDUE MG A 60
10	BC1	SOFTWARE	U A:157	BINDING SITE FOR RESIDUE MG A 62
11	BC2	SOFTWARE	G B:215	BINDING SITE FOR RESIDUE MG B 63
12	BC3	SOFTWARE	G B:174	BINDING SITE FOR RESIDUE MG B 65
13	BC4	SOFTWARE	A A:183 , A A:184 , A A:186 , HOH A:322 , HOH A:323 , HOH A:324	BINDING SITE FOR RESIDUE MG A 1
14	BC5	SOFTWARE	A B:183 , A B:184 , A B:186 , HOH B:326 , HOH B:327 , HOH B:328	BINDING SITE FOR RESIDUE MG B 2
15	BC6	SOFTWARE	A A:183 , A A:184 , A A:186 , A A:187 , G A:188 , HOH A:325 , HOH A:326 , HOH A:327	BINDING SITE FOR RESIDUE MG A 3
16	BC7	SOFTWARE	A B:183 , A B:184 , A B:186 , A B:187 , HOH B:329 , HOH B:330 , HOH B:331	BINDING SITE FOR RESIDUE MG B 4
17	BC8	SOFTWARE	G A:163 , G A:164 , HOH A:328 , HOH A:329 , HOH A:330 , HOH A:331	BINDING SITE FOR RESIDUE MG A 5
18	BC9	SOFTWARE	G B:163 , G B:164 , HOH B:332 , HOH B:333 , HOH B:334 , HOH B:335	BINDING SITE FOR RESIDUE MG B 6
19	CC1	SOFTWARE	A A:171 , HOH A:332 , HOH A:333 , HOH A:334 , HOH A:335 , HOH A:336	BINDING SITE FOR RESIDUE MG A 7
20	CC2	SOFTWARE	A B:171 , HOH B:336 , HOH B:337 , HOH B:338 , HOH B:339 , HOH B:340	BINDING SITE FOR RESIDUE MG B 8
21	CC3	SOFTWARE	A A:173 , HOH A:337 , HOH A:338 , HOH A:339 , HOH A:340 , HOH A:341	BINDING SITE FOR RESIDUE MG A 9
22	CC4	SOFTWARE	A B:173 , HOH B:341 , HOH B:342 , HOH B:343 , HOH B:344 , HOH B:345	BINDING SITE FOR RESIDUE MG B 10
23	CC5	SOFTWARE	G A:188 , HOH A:342 , HOH A:343 , HOH A:344 , HOH A:345 , HOH A:346	BINDING SITE FOR RESIDUE MG A 11
24	CC6	SOFTWARE	G B:188 , HOH B:346 , HOH B:347 , HOH B:348 , HOH B:349 , HOH B:350	BINDING SITE FOR RESIDUE MG B 12
25	CC7	SOFTWARE	G B:112 , HOH B:351 , HOH B:352 , HOH B:353 , HOH B:354 , HOH B:355	BINDING SITE FOR RESIDUE MG B 13
26	CC8	SOFTWARE	HOH A:347 , HOH A:348 , HOH A:349 , HOH A:350 , HOH A:351 , HOH A:352	BINDING SITE FOR RESIDUE MG A 14
27	CC9	SOFTWARE	HOH B:356 , HOH B:357 , HOH B:358 , HOH B:359 , HOH B:360 , HOH B:361	BINDING SITE FOR RESIDUE MG B 15
28	DC1	SOFTWARE	HOH A:353 , HOH A:354 , HOH A:355 , HOH A:356 , HOH A:357 , HOH A:358	BINDING SITE FOR RESIDUE MG A 16
29	DC2	SOFTWARE	HOH B:362 , HOH B:363 , HOH B:364 , HOH B:365 , HOH B:366 , HOH B:367	BINDING SITE FOR RESIDUE MG B 17
30	DC3	SOFTWARE	HOH A:359 , HOH A:360 , HOH A:361 , HOH A:362 , HOH A:363 , HOH A:364	BINDING SITE FOR RESIDUE MG A 18
31	DC4	SOFTWARE	HOH B:368 , HOH B:369 , HOH B:370 , HOH B:371 , HOH B:372 , HOH B:373	BINDING SITE FOR RESIDUE MG B 19
32	DC5	SOFTWARE	HOH A:365 , HOH A:366 , HOH A:367 , HOH A:368 , HOH A:369 , HOH A:370	BINDING SITE FOR RESIDUE MG A 20
33	DC6	SOFTWARE	HOH B:374 , HOH B:375 , HOH B:376 , HOH B:377 , HOH B:378 , HOH B:379	BINDING SITE FOR RESIDUE MG B 21
34	DC7	SOFTWARE	HOH A:371 , HOH A:372 , HOH A:373 , HOH A:374 , HOH A:375 , HOH A:376	BINDING SITE FOR RESIDUE MG A 22
35	DC8	SOFTWARE	HOH B:380 , HOH B:381 , HOH B:382 , HOH B:383 , HOH B:384 , HOH B:385	BINDING SITE FOR RESIDUE MG B 23
36	DC9	SOFTWARE	HOH A:377 , HOH A:378 , HOH A:379 , HOH A:380 , HOH A:381 , HOH A:382	BINDING SITE FOR RESIDUE MG A 24
37	EC1	SOFTWARE	HOH B:386 , HOH B:387 , HOH B:388 , HOH B:389 , HOH B:390 , HOH B:391	BINDING SITE FOR RESIDUE MG B 25
38	EC2	SOFTWARE	HOH A:383 , HOH A:384 , HOH A:385 , HOH A:386 , HOH A:387 , HOH A:388	BINDING SITE FOR RESIDUE MG A 26
39	EC3	SOFTWARE	HOH A:389 , HOH A:390 , HOH A:391 , HOH A:392 , HOH A:393 , HOH A:394	BINDING SITE FOR RESIDUE MG A 27

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

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Chain A from PDB  Type:RNA  Length:157
                                                                                                                                                                                             
                 1hr2 A 103 GAAUUGCGGGAAAGGGGUCAACAGCCGUUCAGUACCAAGUCUCAGGGGAAACUUUGAGAUGGCCUUGCAAAGGGUAUGGUAAUAAGCUGACGGACAUGGUCCUAACACGCAGCCAAGUCCUAAGUCAACAGAUCUUCUGUUGAUAUGGAUGCAGUUC 260
                                   112       122       132       142       152       162       172       182       192       202     ||213       223       233       243       253       
                                                                                                                                   208|                                                  
                                                                                                                                    210

Chain B from PDB  Type:RNA  Length:158
                                                                                                                                                                                              
                 1hr2 B 102 GGAAUUGCGGGAAAGGGGUCAACAGCCGUUCAGUACCAAGUCUCAGGGGAAACUUUGAGAUGGCCUUGCAAAGGGUAUGGUAAUAAGCUGACGGACAUGGUCCUAACACGCAGCCAAGUCCUAAGUCAACAGAUCUUCUGUUGAUAUGGAUGCAGUUC 260
                                   111       121       131       141       151       161       171       181       191       201      |212       222       232       242       252        
                                                                                                                                    208|                                                  
                                                                                                                                     210

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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