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(-) Description

Title :  NMR SOLUTION STRUCTURE OF A FULLY MODIFIED LOCKED NUCLEIC ACID (LNA) HYBRIDIZED TO RNA
 
Authors :  J. Rasmussen, M. Petersen, K. E. Nielsen, R. Kumar, J. Wengel, J. P. Jacobsen
Date :  27 Jun 02  (Deposition) - 17 Jul 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
Keywords :  Dna-Rna Hybrid, Lna, Rna, Locked Nucleic Acid, Hybrid, Dna/Rna Hybrid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. E. Nielsen, J. Rasmussen, R. Kumar, J. Wengel, J. P. Jacobsen, M. Petersen
Nmr Studies Of Fully Modified Locked Nucleic Acid (Lna) Hybrids: Solution Structure Of An Lna:Rna Hybrid And Characterization Of An Lna:Rna Hybrid
Bioconjug. Chem. V. 15 449 2004
PubMed-ID: 15149171  |  Reference-DOI: 10.1021/BC034145H

(-) Compounds

Molecule 1 - 5-D(*(LKC)P*(TLN)P*(LCG)P*(LCA)P*(TLN)P*(LCA)P* (TLN)P*(LCG)P*(LCC))-3
    Chains: A
    Other Details: FULLY MODIFIED LNA STRAND
    Synthetic: YES
 
Molecule 2 - 5-R(*GP*CP*AP*UP*AP*UP*CP*AP*G)-3
    Chains: B
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 9)

NMR Structure (5, 9)
No.NameCountTypeFull Name
1LCA2Mod. Nucleotide[(1R,3R,4R,7S)-7-HYDROXY-3-(ADENIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYLDIHYDROGEN PHOSPHATE
2LCC1Mod. Nucleotide[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYLDIHYDROGEN PHOSPHATE
3LCG2Mod. Nucleotide[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYLDIHYDROGEN PHOSPHATE
4LKC1Mod. Nucleotide4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2,5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN-2(1H)-ONE
5TLN3Mod. Nucleotide[(1R,3R,4R,7S)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYLDIHYDROGEN PHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 1H0Q)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1H0Q)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1H0Q)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1H0Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1H0Q)

(-) Exons   (0, 0)

(no "Exon" information available for 1H0Q)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:9
                                        
                  1h0q A  1 ctgatatgc  9
                            |||||||||
                            ||||||||9-LCC
                            1-LKC||| 
                             2-TLN|| 
                              3-LCG| 
                               4-LCA 
                                5-TLN
                                 6-LCA
                                  7-TLN
                                   8-LCG


Chain B from PDB  Type:RNA  Length:9
                                        
                  1h0q B 10 GCAUAUCAG 18
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1H0Q)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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