1GV6 - JenaLib

Title :   SOLUTION STRUCTURE OF ALFA-L-LNA:DNA DUPLEX

Authors :   K. M. E. Nielsen, M. Petersen, A. E. Haakansson, J. Wengel, J. P. Jacobsen

Date :   06 Feb 02 (Deposition) - 05 Jul 02 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B  (20x)

Keywords :   Locked Nucleic Acid, Lna, Dna, Nmr (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. M. E. Nielsen, M. Petersen, A. E. Haakansson, J. Wengel, J. P. Jacobsen
Alfa-L-Lna (Alfa-L-Ribo Configured Locked Nucleic Acid) Recognition Of Dna: An Nmr Spectroscopic Study
Chemistry V. 8 3001 2002
PubMed-ID: 12489231 | Reference-DOI: 10.1002/1521-3765(20020703)8:13<3001::AID-CHE M3001>3.0.CO;2-1

Compounds

*Molecule 1 - 5- D(CP(ATL)PGPCP(ATL)P(ATL)PCP(ATL)P GPC) -3*
	Chains	:	A
	Other Details	:	ATL IS ALFA-L-LNA (ALFA-L-RIBO CONFIGURED LOCKED NUCLEIC ACID OR [ (1S, 3R, 4S, 7R)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2. 2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE
	Synthetic	:	YES

*Molecule 2 - 5- D(GPCPAPGPAPAPGPCPAPG) -3*
	Chains	:	B
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:DNA/RNA  Length:10
                                         
                  1gv6 A  1 CxGCxxCxGC 10
                             |  || |10
                             |  || |  
                             2-ATL |  
                                5-ATL 
                                 6-ATL
                                   8-ATL

Chain B from PDB  Type:DNA  Length:10
                                         
                  1gv6 B 11 GCAGAAGCAG 20
                                    20

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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